1 5' 3' | 2 5' 3' | 3 5' 3' |
GAGCAGGAGACAGAAGGAGCATGATAATTTTTGGAACAGTCGTTGGACACGGAAATTTCTTTTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAGgtatacactgttaatccatgctaatttctgtatttgcaattatctctagtttgaaaatagttctgacatcttttgcattgtgcag
species | Oryza sativa |
transcript | LOC_Os01g66920.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTGCCTGGCAGTTCTGTGGAAACATTGGAAG CACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCGEST: gi|88257206|gb|CI359594.1|CI359594
genomic: TTTGCCTGGCAGTTCTGTGGAAACATTGGAAGgtatacactg ... cattgtgcagCACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCG
EST: GGAAACATTGGAAG CACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCGEST: gi|86413191|gb|CI067596.1|CI067596
genomic: GGAAACATTGGAAGgtatacactg ... cattgtgcagCACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCG
EST: GGAAATTTCTTGTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAG CACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCGEST: gi|86437642|gb|CI119364.1|CI119364
genomic: GGAAATTTCTTTTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAGgtatacactg ... cattgtgcagCACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCG
EST: GGAAATTTCTTTTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAG CACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCGEST: gi|86481877|gb|CI124510.1|CI124510
genomic: GGAAATTTCTTTTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAGgtatacactg ... cattgtgcagCACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCG
EST: AATTTCTTGTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAG CACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCGEST: gi|87017926|gb|CI273948.1|CI273948
genomic: AATTTCTTTTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAGgtatacactg ... cattgtgcagCACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCG
EST: GGAAATTTCTTTTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAG CACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCGEST: gi|86483082|gb|CI125715.1|CI125715
genomic: GGAAATTTCTTTTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAGgtatacactg ... cattgtgcagCACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCG
EST: GGAAATTTCTTTTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAG CACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCG
genomic: GGAAATTTCTTTTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAGgtatacactg ... cattgtgcagCACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAGGAGACAGAAGGAGCATGATAATTTTTGGAACAGTCGTTGGACACGGAAATTTCTTTTTCTTCTTTGCCTGGCAGTTCTGTGGAAACATTGGAAGgtatacactgttaatccatgctaatttctgtatttgcaattatctctagtttgaaaatagttctgacatcttttgcattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG