1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGATCTACACTTTTTTGTAACTGGAGGTGATGAAGAGAATGAGCTCATTTTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacatttcctgtgccgtacactcctatcttttttaacatccattataaatgcttgtcagtactgtatactattttaacaactctctttcttgttttcag
species | Oryza sativa |
transcript | LOC_Os01g62150.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTAGCATCTGTTCTTCAGGGCTTCTCTGAGGCTATTGATTACCTTCTCAG AAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTTEST: gi|86822723|gb|CI251806.1|CI251806
genomic: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacat ... ttgttttcagAAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTT
EST: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAG AAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTTEST: gi|25807173|gb|CA763128.1|CA763128
genomic: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacat ... ttgttttcagAAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTT
EST: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAG AAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTTEST: gi|33688268|gb|CF316507.1|CF316507
genomic: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacat ... ttgttttcagAAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTT
EST: TTAGCATCTGTTCTTCAGGGCTTCTCTGAGGCTATTGATTACCTTCTCAG AAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTTEST: gi|163928249|gb|EG714641.1|EG714641
genomic: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacat ... ttgttttcagAAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTT
EST: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAG AAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTTEST: gi|58686756|gb|CK075443.1|CK075443
genomic: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacat ... ttgttttcagAAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTT
EST: TAGCATCTGTTCTTCAGAGGCTTCTCTGAAGCTATTGATTACCTTCTCAG AAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTTEST: gi|33656563|gb|CF279177.1|CF279177
genomic: TAGCATCTGTTCTTCAG-GGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacat ... ttgttttcagAAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTT
EST: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAG AAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTTEST: gi|33657559|gb|CF280173.1|CF280173
genomic: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacat ... ttgttttcagAAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTT
EST: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAG AAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTTEST: gi|86599370|gb|CI251328.1|CI251328
genomic: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacat ... ttgttttcagAAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTT
EST: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAG AAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTTEST: gi|88386053|gb|CI570688.1|CI570688
genomic: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacat ... ttgttttcagAAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTT
EST: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAG AAACAAAGTGCACAGAAGGGGTGGGCTTGAAAACTTG
genomic: TTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacat ... ttgttttcagAAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATCTACACTTTTTTGTAACTGGAGGTGATGAAGAGAATGAGCTCATTTTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacatttcctgtgccgtacactcctatcttttttaacatccattataaatgcttgtcagtactgtatactattttaacaactctctttcttgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC