1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACAGTTCGCATTTGGCAAGAGAGCGAGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAGgttagtattcatatgatctcacttctatattgatctttatttcatttcattactggtgaacatctgcagcaactgaagagcaaattgcattgaagctcat...
species | Oryza sativa |
transcript | LOC_Os01g35580.5 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAG GATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTCEST: gi|33797156|gb|CF324443.1|CF324443
genomic: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAGgttagtattc ... tgtcttacagGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTC
EST: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAG GATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTCEST: gi|58675222|gb|CK063909.1|CK063909
genomic: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAGgttagtattc ... tgtcttacagGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTC
EST: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAG GATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTC
genomic: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAGgttagtattc ... tgtcttacagGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGTTCGCATTTGGCAAGAGAGCGAGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAGgttagtattcatatgatctcacttctatattgatctttatttcatttcattactggtgaacatctgcagcaactgaagagcaaattgcattgaagctcat
- - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA