1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATTTGCAAGTTAAGTCATCACCACCTCCACCGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAGgtaccgcaatgaaacaaaaacattgaaaaatacttcttagagccgcacaactcatgcaattctgttctgcag
species | Oryza sativa |
transcript | LOC_Os01g02090.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAG TCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGAEST: gi|218502808|gb|FG943217.1|FG943217
genomic: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAGgtaccgcaat ... tgttctgcagTCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGA
EST: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAG TCACACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGAEST: gi|29638770|gb|CB643779.1|CB643779
genomic: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAGgtaccgcaat ... tgttctgcagTCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGA
EST: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAG TCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGAEST: gi|29636683|gb|CB641692.1|CB641692
genomic: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAGgtaccgcaat ... tgttctgcagTCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGA
EST: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAG TCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGAEST: gi|88723859|gb|CI745556.1|CI745556
genomic: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAGgtaccgcaat ... tgttctgcagTCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGA
EST: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAG TCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGAEST: gi|58671766|gb|CK060452.1|CK060452
genomic: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAGgtaccgcaat ... tgttctgcagTCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGA
EST: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAG TCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGA
genomic: CGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAGgtaccgcaat ... tgttctgcagTCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAGTTTGCCTTCTGCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTTGCAAGTTAAGTCATCACCACCTCCACCGCCACCACCACAACCAGCTGCCCCGCACAATGATCCTGCCATAATACAGgtaccgcaatgaaacaaaaacattgaaaaatacttcttagagccgcacaactcatgcaattctgttctgcag
- - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - AGCTGC