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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccactcattaactttttcataccattacaatactgtttttgtggacctatgtttgatttgtattcacttttgtttcatag

Basic information

species Oryza sativa
transcript LOC_Os08g22864.2
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g22864.2 (Oryza sativa), 5'ss of exon 24
lower sequence: GRMZM2G327394_T01 (Zea mays), 5'ss of exon 25
TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccactcattaac-tttttcataccattacaatactgttttt-gtggacctatgtttgatttgtattca---cttttgtttcatag
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TCTTTGCTTGGATTCATCGCAGAACATGAATATTTGTTTTCTGCTAAAGAgtaagc--ctgacaaacatttttcacataaccacatcattgtttatagttgaactgtattc-atctgggttcaaaatgttcattccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86853148|gb|CI324850.1|CI324850
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|86437704|gb|CI119624.1|CI119624
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|88382101|gb|CI533305.1|CI533305
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|86603014|gb|CI357378.1|CI357378
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|86480174|gb|CI122807.1|CI122807
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|88505109|gb|CI432615.1|CI432615
EST:     TTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|88269996|gb|CI381294.1|CI381294
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|86480164|gb|CI122797.1|CI122797
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|58586846|gb|CF985154.1|CF985154
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|29624113|gb|CB629124.1|CB629124
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|29626007|gb|CB631018.1|CB631018
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|88253653|gb|CI352279.1|CI352279
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCCTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|29626379|gb|CB631390.1|CB631390
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCCTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|88966526|gb|CI353078.1|CI353078
EST:     GCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: GCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|86437028|gb|CI118750.1|CI118750
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|88437181|gb|CI526330.1|CI526330
EST:     TTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|88670678|gb|CI724794.1|CI724794
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGT
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGT
EST: gi|88286403|gb|CI524902.1|CI524902
EST:     ACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: ACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|88671305|gb|CI724351.1|CI724351
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATNTATTTCCTGCAAAAGA                         ATACTTGAGCG
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCG
EST: gi|58692351|gb|CK081038.1|CK081038
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
EST: gi|88996514|gb|CI260018.1|CI260018
EST:     TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA                         ATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA
genomic: TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGAgtaagccact ... tgtttcatagATACTTGAGCGTGTTAAAGGTCAACGTTCCTGGAAGAGAGATGCCAATGGA