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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTCGCTCAGATGAAGTCGATCAATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttttttctgcagtatgatataaaacaaatatgcctcatctgtattttggtatagtcctttatactttactgcagtttgaaacggtttttaatggataataggaggcctaattcattgctcgcatttgcaaataaaataccactactcttaatgcag

Basic information

species Oryza sativa
transcript LOC_Os08g22864.2
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g22864.2 (Oryza sativa), 5'ss of exon 22
lower sequence: GRMZM2G327394_T01 (Zea mays), 5'ss of exon 23
GCACTCGCTCAGATGAAGTCGATCAATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttttttctg-cagtatgatataaaacaaatatgcctcatctgtattttggtatagtcctttatactttactgcagtttgaaacggtttt-taatggataataggaggcctaattcattgctcgcatttgcaaataaaataccactactcttaatgcag
||||| ||||| |||||||| || || |||||||| ||||| ||||||||||| ||||| ||||| || ||||||||    ||||| | || ||| || |||||||   | |||   |  |||||||| || |    |  | | |   |  |||| ||| |  ||   ||| | |  |  ||  | || ||||  |   |  || |   ||||||| ||||  |   |            
GCACTTGCTCAAATGAAGTCAATAAACTTGTTAGGAGTCCAGCAAATATGCAGGAATTCGATAGCTCTGGAACAGgtgaggtttttatatgacagcatcatataaa--cattatattt--tctgtattatgctt---ttttctgtctgtgtctgctgttcgtcacaactttatgacagtaaaaggcagacctatatatgtagtcactcatgcaaatgaaatctctgcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86437704|gb|CI119624.1|CI119624
EST:     ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
genomic: ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
EST: gi|86480174|gb|CI122807.1|CI122807
EST:     ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
genomic: ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
EST: gi|88269996|gb|CI381294.1|CI381294
EST:     AATATGCAGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATACCCTCAATTGACAGTGAACCCGTCCAACAGAGAATA
genomic: AATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
EST: gi|86480164|gb|CI122797.1|CI122797
EST:     ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
genomic: ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
EST: gi|58586846|gb|CF985154.1|CF985154
EST:     ATTTGTTAGGGGTCCAACAAATATGCGGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
genomic: ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
EST: gi|29624113|gb|CB629124.1|CB629124
EST:     ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
genomic: ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
EST: gi|29626007|gb|CB631018.1|CB631018
EST:     ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
genomic: ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
EST: gi|86437028|gb|CI118750.1|CI118750
EST:     ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
genomic: ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
EST: gi|88670678|gb|CI724794.1|CI724794
EST:     ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATANCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
genomic: ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
EST: gi|88671305|gb|CI724351.1|CI724351
EST:     ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
genomic: ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
EST: gi|58692351|gb|CK081038.1|CK081038
EST:     ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
genomic: ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
EST: gi|88996514|gb|CI260018.1|CI260018
EST:     ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAG                         GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA
genomic: ATTTGTTAGGGGTCCAACAAATATGCAGAAATTCTATAGCACTAGAACAGgtagaatttt ... cttaatgcagGCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATA