1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GTGGTCTTGGACTCAGATGCTGGACTCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttgctcagatgaaattgcgtaccgtatattgtgtgctctttattaacctctgttgtgctcattccttgcag
species | Oryza sativa |
transcript | LOC_Os02g32660.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: GGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|88331395|gb|CI675728.1|CI675728
genomic: GGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCCTCCTAGEST: gi|55440790|gb|CV733707.1|CV733707
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATT-CTCCTAG
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|86436924|gb|CI118646.1|CI118646
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|88538824|gb|CI467885.1|CI467885
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: ACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|2797177|gb|AA750471.1|AA750471
genomic: ACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: CTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|87017784|gb|CI273806.1|CI273806
genomic: CTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: CACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGCCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|2797358|gb|AA750652.1|AA750652
genomic: CACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|86597068|gb|CI272663.1|CI272663
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|88412500|gb|CI688850.1|CI688850
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|88528801|gb|CI457067.1|CI457067
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: GGATTTGGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGGCCCTACTCGTTCTCAGTTTATTCTCCTAGEST: gi|86478949|gb|CI121582.1|CI121582
genomic: GGATTT-GGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACA-GGCCCTACTCGTTCTCAGTTTATTCTCCTAG
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|2798141|gb|AA751435.1|AA751435
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|2799495|gb|AA752484.1|AA752484
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|86480418|gb|CI123051.1|CI123051
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|88851918|gb|CI679476.1|CI679476
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|88539730|gb|CI469711.1|CI469711
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|88535266|gb|CI464058.1|CI464058
genomic: TGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: ATCACACTGCAGAGCACTTCAGTGCC GATTGTTCACATAACAACAGGCCCTACTCGTTTTCAGTTTATTCTCCTAGCEST: gi|88582727|gb|CI700155.1|CI700155
genomic: ATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|88538134|gb|CI467137.1|CI467137
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTGGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|86527618|gb|CI167824.1|CI167824
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|86526879|gb|CI167085.1|CI167085
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|86479150|gb|CI121783.1|CI121783
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTAGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|2799484|gb|AA752473.1|AA752473
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGAEST: gi|88432744|gb|CI690588.1|CI690588
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGA
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|88549688|gb|CI479595.1|CI479595
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|88529373|gb|CI457683.1|CI457683
genomic: TGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGCEST: gi|88524423|gb|CI452333.1|CI452333
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
EST: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC GATTGTTCACATGACNACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
genomic: TCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttg ... ttccttgcagGATTGTTCACATGACAACAGGCCCTACTCGTTCTCAGTTTATTCTCCTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTCTTGGACTCAGATGCTGGACTCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCgtaagtcttgctcagatgaaattgcgtaccgtatattgtgtgctctttattaacctctgttgtgctcattccttgcag
- - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA