1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATCACGAACCTCCTCGCTGCGGTCCTCATCGCGCTCACCTTCGGTCAGCTCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAGgttagccaccttctcttaagcatctgaaatagtatatccctgaattaatacatttctgattgttagttagtctgaaattttgctgacagtgatttttttttgtttgcaatgaag
species | Oryza sativa |
transcript | LOC_Os12g31850.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAG GATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGTEST: gi|88299367|gb|CI572319.1|CI572319
genomic: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAGgttagccacc ... tgcaatgaagGATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
EST: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAG GATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGTEST: gi|29665274|gb|CB661549.1|CB661549
genomic: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAGgttagccacc ... tgcaatgaagGATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
EST: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAG GATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGTEST: gi|29614656|gb|CB619669.1|CB619669
genomic: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAGgttagccacc ... tgcaatgaagGATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
EST: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAG GATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
genomic: TCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAGgttagccacc ... tgcaatgaagGATAATTGGCCTTCAGTGCTGTTTGCAATGGCAGGGGGTGTTGTGCTCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCACGAACCTCCTCGCTGCGGTCCTCATCGCGCTCACCTTCGGTCAGCTCGGCGATAGCAAGCCCAACATGCCCAATTTCTTCACCCAGCTCAGTCAGgttagccaccttctcttaagcatctgaaatagtatatccctgaattaatacatttctgattgttagttagtctgaaattttgctgacagtgatttttttttgtttgcaatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA