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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAGCAGCAGCTGCAGACTCCAAGAACATTCTTGTGATGGGGGGAACCAGGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagttgtgtagtgtgatattttttcccctgtaagtacaatattttctgtgttttggagaagtaagttaattgaaaaactgtatttgttag

Basic information

species Oryza sativa
transcript LOC_Os12g23180.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g23180.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G080546_T04 (Zea mays), 5'ss of exon 2
GGTAGCAGCAGCTGCAGACTCCAAGAACATTCTTGTGATGGGGGGAACCAGGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagttgtgtagtgtgatattttttcccctgtaagtacaatattttctg--------------tgttttggagaagtaagttaattgaaaaactgtatttgttag
|||  |||| ||||| ||||||||||||||||| || |||||||| || |||||||| || |||||| ||||||||||||||||||||||||| ||||||    |||||| || |    | |     ||| | ||| ||  ||      ||| |              ||||||  | |   || ||||    ||||  ||     | ||
GGTCTCAGCGGCTGCGGACTCCAAGAACATTCTGGTCATGGGGGGGACTAGGTTCATCGGGGTCTTCCTGTCCAGGCTCCTTGTCAAGGAGGGCCACCAG-

upper sequence: LOC_Os12g23180.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA03G38930.1 (Glycine max), 5'ss of exon 2
GGTA-GCAGCAGCTGCAGACTCCAAGAACATTCTTGTGATGGGGGGAACCAGGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatg--tcagttgtgtagtg-tgatattttttcccctgtaagtac-------aatattttctgtgttttggagaagtaagttaattgaaaaactgtatttgttag-------------------------------------------------------------------------
  || |   | ||  |   | ||||||| || ||  | ||||| || |||||||| |||||||| || ||||| |||||||||||||| ||||| |||||||||||  | |  | | |     | |   |  | | |||||   |         |||  ||| |   |  |  |  | ||  ||  || |  ||   |||||   |                                                                          
-CTACGTCTCCGCATCGAGCACCAAGAAAATCCTAATAATGGGAGGCACCAGGTTTATTGGTGTGTTTTTGTCTAGGCTCCTTGTCAAAGAGGGTCACCAGgtatgacttacctatttcacactaactctggtacgcctgtgtttgttctggggaatgatttttcattcctccaagaatatttttctt-aggaatgatattttaaaaaatcttttatacctatgtttggatattttatatagtttcaaaattttgatgataaaacatatgaatttggcag

upper sequence: LOC_Os12g23180.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA19G41540.2 (Glycine max), 5'ss of exon 2
GGTA-GCAGCAGCTGCAGACTCCAAGAACATTCTTGTGATGGGGGGAACCAGGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatg--tcagttgtgtagtgtga--tattttttcccctgtaagtacaatattttctgtgttttggagaagtaagttaattgaaa--------aactgtatttgttag------------------------------------------------
  || |   | ||  |   | ||||||| || ||  | ||||| || |||||||| |||||||| || || || ||||||||||| || ||||| |||||||||||  | | || | |    | |  | | | |   |||||   |             | |||    ||   |  ||  || |||        | || | |||| ||                                                 
-CTACGTCTCGGCATCGAGCACCAAGAAAATCCTAATAATGGGAGGCACCAGGTTTATTGGTGTGTTTTTATCTAGGCTCCTTGTTAAAGAGGGTCACCAGgtatgacttacttatttctcattaactctgtgtatgcctgtgtttgtttggagaataatttttcaaggagtgatattttttaaaaccttttatacctatgtttggtaattttatatagtttcaatattttgatgataaaacatgtgaatttggcag

upper sequence: LOC_Os12g23180.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT1G09340.1 (Arabidopsis thaliana), 5'ss of exon 2
GGTA-GCAGCAGCTGCAGACTCCAAGAACATTCTTGTGATGGGGGGAACCAGGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagttgtgtagtgtgatattttttcccctgtaagtacaatattttctgtgttttggagaagta-agttaattgaaaaactgtatttgttag
  || |   ||||  |   |   ||||| |||||  | ||||| || ||  | ||||||||| | |||||||||||| |||||||||| ||||| || |||||   ||   |    |      | | |||||  ||  || |    || |||| || | |  | ||   |  |||  ||    |              
-CTATGTTTCAGCGTCGAGCGAAAAGAAGATTCTGATAATGGGTGGTACTCGATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGgt---tccactaccgatcaaactctcttttcagctaaaaatt---tagtttccgtttctgagtgaccaatggttgcttttgcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117245160|gb|CT843373.1|CT843373
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|700910|gb|D47201.1|D47201
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88414755|gb|CI604113.1|CI604113
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88675953|gb|CI730066.1|CI730066
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88594480|gb|CI714438.1|CI714438
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88407249|gb|CI583707.1|CI583707
EST:     GGTTCATTGGTGTTTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88675773|gb|CI729345.1|CI729345
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88691761|gb|CI733338.1|CI733338
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88417458|gb|CI579119.1|CI579119
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88669168|gb|CI720125.1|CI720125
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88371164|gb|CI597641.1|CI597641
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|33677200|gb|CF305439.1|CF305439
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88385631|gb|CI566493.1|CI566493
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAC-A
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88690431|gb|CI734510.1|CI734510
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88691302|gb|CI733886.1|CI733886
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88668054|gb|CI722793.1|CI722793
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88369375|gb|CI580397.1|CI580397
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88908703|gb|CI714845.1|CI714845
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88690341|gb|CI734420.1|CI734420
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|58612488|gb|CK040200.1|CK040200
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88716945|gb|CI740455.1|CI740455
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|4715045|gb|AU056162.1|AU056162
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88689317|gb|CI732893.1|CI732893
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88959613|gb|CI716979.1|CI716979
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88689088|gb|CI732664.1|CI732664
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88670871|gb|CI724987.1|CI724987
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88689987|gb|CI734066.1|CI734066
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCACCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88672987|gb|CI727102.1|CI727102
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCACCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88688868|gb|CI732444.1|CI732444
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88677102|gb|CI731215.1|CI731215
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|29616758|gb|CB621770.1|CB621770
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|4714620|gb|AU055737.1|AU055737
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|58586288|gb|CF984596.1|CF984596
EST:     GGTTCATGGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88407168|gb|CI581255.1|CI581255
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|29677622|gb|CB673897.1|CB673897
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|4715015|gb|AU056132.1|AU056132
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|89171422|gb|CI720481.1|CI720481
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88722781|gb|CI746291.1|CI746291
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|58606400|gb|CK034433.1|CK034433
EST:     GGTTCATTGGGGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|33671324|gb|CF299563.1|CF299563
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88668281|gb|CI723020.1|CI723020
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88687982|gb|CI731558.1|CI731558
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|701397|gb|D47688.1|D47688
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|29686769|gb|CB683044.1|CB683044
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|700903|gb|D47194.1|D47194
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|25798418|gb|CA754379.1|CA754379
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88666221|gb|CI716377.1|CI716377
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTCCACTACAGGAAAGGCCCCCATTACCCAGCCAGTTGCCAGG
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGC-AGTTGCCAGG
EST: gi|29688264|gb|CB684539.1|CB684539
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|33818344|gb|CF335005.1|CF335005
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88667558|gb|CI722297.1|CI722297
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|29687127|gb|CB683402.1|CB683402
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|29680127|gb|CB676402.1|CB676402
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88666404|gb|CI716560.1|CI716560
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88432402|gb|CI565435.1|CI565435
EST:     GGTTCATTGGTGTCTTCTTGTCCAGTCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAG
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAG
EST: gi|88668982|gb|CI719939.1|CI719939
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|89171479|gb|CI720538.1|CI720538
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88675588|gb|CI729701.1|CI729701
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|89172120|gb|CI721179.1|CI721179
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|33819115|gb|CF335382.1|CF335382
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88368903|gb|CI658569.1|CI658569
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|4715701|gb|AU056817.1|AU056817
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88666611|gb|CI718747.1|CI718747
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88668018|gb|CI722757.1|CI722757
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88908633|gb|CI713191.1|CI713191
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|29618996|gb|CB624008.1|CB624008
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|29669462|gb|CB665737.1|CB665737
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88675317|gb|CI728536.1|CI728536
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88666220|gb|CI716376.1|CI716376
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCC-ATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|58594372|gb|CF992680.1|CF992680
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88298920|gb|CI567923.1|CI567923
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88325684|gb|CI648127.1|CI648127
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88371488|gb|CI602666.1|CI602666
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGGACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCACGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|1631426|gb|C19155.1|C19155
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88299683|gb|CI577185.1|CI577185
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88407984|gb|CI589013.1|CI589013
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCT---CAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88675979|gb|CI730092.1|CI730092
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88570492|gb|CI661865.1|CI661865
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88672609|gb|CI726725.1|CI726725
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88674622|gb|CI728735.1|CI728735
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88595085|gb|CI715241.1|CI715241
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|29685534|gb|CB681809.1|CB681809
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|38469207|gb|CF953338.1|CF953338
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88310926|gb|CI659529.1|CI659529
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88904684|gb|CI711983.1|CI711983
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88668156|gb|CI722895.1|CI722895
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88687892|gb|CI731468.1|CI731468
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|29656256|gb|CB652531.1|CB652531
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88691944|gb|CI735519.1|CI735519
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|33820410|gb|CF336016.1|CF336016
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88445374|gb|CI584487.1|CI584487
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88673608|gb|CI727721.1|CI727721
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88312070|gb|CI580235.1|CI580235
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCATATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|38473628|gb|CF957760.1|CF957760
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCCCTCGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88415088|gb|CI583911.1|CI583911
EST:     GTTCATTTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GTTCATT-GGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88724984|gb|CI748243.1|CI748243
EST:     GGTTCATTACTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|58586954|gb|CF985262.1|CF985262
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|88904906|gb|CI712205.1|CI712205
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|58607155|gb|CK035188.1|CK035188
EST:     GGAGGGGCACCAG                         GTCACA-TGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAG-TGCCAGGA
genomic: GGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|1944274|gb|C23596.1|C23596
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
EST: gi|33381654|gb|CF196997.1|CF196997
EST:     GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAG                         GTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA
genomic: GGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 72 (downstream exon)
Score: 261

GGTAGCAGCAGCTGCAGACTCCAAGAACATTCTTGTGATGGGGGGAACCAGGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagt ... tatttgttagGTCACATTGTTCACTAGAGGAAAGGCCCCCATTACCCAGCAGTTGCCAGGAGAGTCAGATGCAGAGTATGCAGAGTTCTCTTCAAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTAGCAGCAGCTGCAGACTCCAAGAACATTCTTGTGATGGGGGGAACCAGGTTCATTGGTGTCTTCTTGTCCAGGCTCCTTGTCAAGGAGGGGCACCAGgtatgtcagttgtgtagtgtgatattttttcccctgtaagtacaatattttctgtgttttggagaagtaagttaattgaaaaactgtatttgttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG