1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGGTGGAGTCGGAGCGCGACCCGGCGAAGGACCCCCTCGTGCTCTGGCTCAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatatcccatccacacacacacacctcctgccccctcgccgtcgccggagctagcctccggccgcggcgcgttgcggcggcgagtcgtctcgtcg...
species | Oryza sativa |
transcript | LOC_Os12g15470.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAACGGCGGCCCCTGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|117240321|gb|CT842747.1|CT842747
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|29668081|gb|CB664356.1|CB664356
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCCGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|58695212|gb|CK083899.1|CK083899
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|33801783|gb|CF326764.1|CF326764
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|58660840|gb|CK049520.1|CK049520
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|4715276|gb|AU056393.1|AU056393
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: GGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
genomic: GGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGTGGAGTCGGAGCGCGACCCGGCGAAGGACCCCCTCGTGCTCTGGCTCAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatatcccatccacacacacacacctcctgccccctcgccgtcgccggagctagcctccggccgcggcgcgttgcggcggcgagtcgtctcgtcg
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