1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCAGCCAGAAAGAGGCGATGGATTTCAAAGTCGCTTCCTTTCTCCTACTCCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgccctaatccaacaccttcccttcctcccttacctatgctcctcctggctcctgcatgcagtttggaaccaacatgtcaaacattctcaagggaaa...
species | Oryza sativa |
transcript | LOC_Os12g02094.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGEST: gi|112786000|gb|EE591849.1|EE591849
genomic: CTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTT-Ggtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATG
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTTATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|33799287|gb|CF325500.1|CF325500
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|33682433|gb|CF310672.1|CF310672
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|218503573|gb|FG955591.1|FG955591
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88689898|gb|CI733977.1|CI733977
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88425446|gb|CI567166.1|CI567166
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88689967|gb|CI734046.1|CI734046
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|33685697|gb|CF313936.1|CF313936
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CAGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAAGGNATTTTG TTGTCCTTGATCTAGAAACAACTGAGGTCGNGGGAAGATGCTAGCCCAATEST: gi|88689163|gb|CI732739.1|CI732739
genomic: CTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATG-ATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCG-GGGAAGATGCTAGCCCAAT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88688761|gb|CI732337.1|CI732337
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88311321|gb|CI570395.1|CI570395
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88302529|gb|CI668375.1|CI668375
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|33662366|gb|CF293333.1|CF293333
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|33674096|gb|CF302335.1|CF302335
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|3759063|gb|C96762.1|C96762
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAG-TGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88691138|gb|CI735217.1|CI735217
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|86596763|gb|CI286676.1|CI286676
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88689486|gb|CI733062.1|CI733062
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88691293|gb|CI733877.1|CI733877
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88335964|gb|CI645565.1|CI645565
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88403184|gb|CI570925.1|CI570925
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88329157|gb|CI657232.1|CI657232
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88690026|gb|CI734105.1|CI734105
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88691778|gb|CI733355.1|CI733355
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88363793|gb|CI610553.1|CI610553
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88312110|gb|CI580275.1|CI580275
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88688631|gb|CI732207.1|CI732207
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGTEST: gi|88396817|gb|CI577966.1|CI577966
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
EST: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTG TTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
genomic: CCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgcccta ... tccttctcagTTGTCCTTGATCTAAAAACAACTGAGGTCGGGGAAGATGCTAGCCCAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAGCCAGAAAGAGGCGATGGATTTCAAAGTCGCTTCCTTTCTCCTACTCCTGTTAATCGTCACCTGCGGAGCTGCTCAAGGTCAAGGCAATGATTTTGgtacgccctaatccaacaccttcccttcctcccttacctatgctcctcctggctcctgcatgcagtttggaaccaacatgtcaaacattctcaagggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc