1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcatgccattctctactagcttagaacttgtgagtttaactgtaacagttcttcgcccctcctcgatgccgttacttcctctggctggtcgccc...
species | Oryza sativa |
transcript | LOC_Os11g01439.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|58611460|gb|CK039172.1|CK039172
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88372838|gb|CI640289.1|CI640289
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAGGATAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88421042|gb|CI566883.1|CI566883
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAGGATAAAACTCGCTAATCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATEST: gi|88452974|gb|CI574521.1|CI574521
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAAT
EST: ATGGCCAAGCAAGGAAAGGAAAGGATAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|29630414|gb|CB635423.1|CB635423
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|29629416|gb|CB634425.1|CB634425
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88407871|gb|CI588900.1|CI588900
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGGGGCATAATCEST: gi|29625751|gb|CB630762.1|CB630762
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAGGATAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|29665531|gb|CB661806.1|CB661806
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAGGATAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|29632487|gb|CB637496.1|CB637496
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88404492|gb|CI580928.1|CI580928
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88386552|gb|CI575330.1|CI575330
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88300355|gb|CI584774.1|CI584774
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAGGATAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88387409|gb|CI582927.1|CI582927
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88401879|gb|CI591206.1|CI591206
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88311624|gb|CI574841.1|CI574841
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAGGATAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|29682182|gb|CB678457.1|CB678457
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88452934|gb|CI574481.1|CI574481
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88393142|gb|CI616626.1|CI616626
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAGGATAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCCGGCATAATEST: gi|58612670|gb|CK040382.1|CK040382
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGC-GGCATAAT
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|88428502|gb|CI564970.1|CI564970
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATCEST: gi|702324|gb|D48615.1|D48615
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
EST: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACAT GGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
genomic: ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcat ... tgtggttcagGGGGAGAAAGAAGAAGAGAAGGAAGAGGTTAAAACAATCAGCGGCATAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGCCAAGCAAGGAAAGGAAAAGACAAAACTCGCTACTCTGAACATgtaagtgcatgccattctctactagcttagaacttgtgagtttaactgtaacagttcttcgcccctcctcgatgccgttacttcctctggctggtcgccc
- - - AAGCAA
- - - AGCAAG
- - - - - AAGGAA
- - - - - - - AAGGAA