1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTACGGCTTCGACAAGGGTGACATTGGCCGCCTCTTCATCGCCGGCTTCGGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcccgtgttttactcgttgattttgttgtgtttgtttggattttttttttgatgaggttgtgatgcttcctggttgtcgtag
species | Oryza sativa |
transcript | LOC_Os10g37520.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCA GGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTGEST: gi|88388856|gb|CI592744.1|CI592744
genomic: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcc ... gttgtcgtagGGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTG
EST: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCA GGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTGEST: gi|88415269|gb|CI586475.1|CI586475
genomic: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcc ... gttgtcgtagGGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTG
EST: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCA GGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTGEST: gi|88402489|gb|CI596350.1|CI596350
genomic: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcc ... gttgtcgtagGGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTG
EST: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCA GGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTGEST: gi|88361351|gb|CI626455.1|CI626455
genomic: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcc ... gttgtcgtagGGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTG
EST: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCA GGGGAGGAAGAGGGCGTGCATTACCTACTGGATCAGCTACATCCTGAGCTGEST: gi|58687079|gb|CK075766.1|CK075766
genomic: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcc ... gttgtcgtagGGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTG
EST: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCA GGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTGEST: gi|58609294|gb|CK037327.1|CK037327
genomic: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcc ... gttgtcgtagGGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTG
EST: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCA GGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTGEST: gi|7134673|gb|AU082615.1|AU082615
genomic: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcc ... gttgtcgtagGGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTG
EST: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCA GGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTGEST: gi|58675854|gb|CK064541.1|CK064541
genomic: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcc ... gttgtcgtagGGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTG
EST: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCA GGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTGEST: gi|58694444|gb|CK083131.1|CK083131
genomic: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcc ... gttgtcgtagGGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTG
EST: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCA GGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTGEST: gi|88764709|gb|CI773827.1|CI773827
genomic: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcc ... gttgtcgtagGGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCTGAGCTG
EST: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCA GGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCT
genomic: GGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcc ... gttgtcgtagGGGGAGGAAGAGGGCGTGCATTACCTACTGCATCAGCTACATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTACGGCTTCGACAAGGGTGACATTGGCCGCCTCTTCATCGCCGGCTTCGGCTCCTCGATGCTCTTCGGCACCATCGTCGGATCCCTCGCCGATAAGCAgtgcgtgtcccgtgttttactcgttgattttgttgtgtttgtttggattttttttttgatgaggttgtgatgcttcctggttgtcgtag
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