1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacatatgtagatcagcacattgcctttgtgcattgaagctcttgttattgttgttgttgttgttcatacaagctagtaaaacatgtgtgtttctttaatatctag
species | Oryza sativa |
transcript | LOC_Os10g28350.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAG AACTAGGAGTAATCAGCTGGCGCCTAAATCCTGGTAACTGGGAGAATTGCGEST: gi|88316332|gb|CI621571.1|CI621571
genomic: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacat ... taatatctagAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCG
EST: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAG AACTAGGAGTAATCAGCTGGCGCCTAAATACTGATAACTGGGAGAATTGCGEST: gi|87004408|gb|CI298940.1|CI298940
genomic: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacat ... taatatctagAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCG
EST: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAG AACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGEST: gi|313081104|gb|HO213690.1|HO213690
genomic: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacat ... taatatctagAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCG
EST: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAG AACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGEST: gi|33693836|gb|CF322075.1|CF322075
genomic: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacat ... taatatctagAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCG
EST: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAG AACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGEST: gi|88569799|gb|CI660974.1|CI660974
genomic: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacat ... taatatctagAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCG
EST: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAG AACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGEST: gi|88352347|gb|CI615601.1|CI615601
genomic: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacat ... taatatctagAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCG
EST: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAG AACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGEST: gi|88340295|gb|CI652644.1|CI652644
genomic: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacat ... taatatctagAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCG
EST: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAG AACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGEST: gi|88335605|gb|CI642829.1|CI642829
genomic: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacat ... taatatctagAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCG
EST: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAG AACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGEST: gi|88401387|gb|CI585943.1|CI585943
genomic: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacat ... taatatctagAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCG
EST: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAG AACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCG
genomic: TCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacat ... taatatctagAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGgtttgcacatatgtagatcagcacattgcctttgtgcattgaagctcttgttattgttgttgttgttgttcatacaagctagtaaaacatgtgtgtttctttaatatctag
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