1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGgtaggtcgcttcgccgcggcgattaacctgcggctttcctttactgtttaagctgcatctgaggggaatttcatttttggtatggatgacgactcacag
species | Oryza sativa |
transcript | LOC_Os08g41010.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCGACAACCGTAGGCGATCTGCTGGAAAGCGTGCCCGCACCGACG GTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAACTEST: gi|88358394|gb|CI606903.1|CI606903
genomic: GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGgtaggtcgct ... cgactcacagGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAACT
EST: GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACG GTGGGCGGCGTGGGGACGAGTGGGTTTGCCCCAGCTGCCAGAACGTCAACTEST: gi|88724063|gb|CI749073.1|CI749073
genomic: GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGgtaggtcgct ... cgactcacagGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAACT
EST: GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACG GTGGGCGGCGTGAGGACGACTGGGTTTGGCCCAGCTGCCAGAACGTCAACTEST: gi|58673635|gb|CK062321.1|CK062321
genomic: GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGgtaggtcgct ... cgactcacagGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAACT
EST: GTGCCCGCACCGACG GTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAGCGTCAACT
genomic: GTGCCCGCACCGACGgtaggtcgct ... cgactcacagGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGgtaggtcgcttcgccgcggcgattaacctgcggctttcctttactgtttaagctgcatctgaggggaatttcatttttggtatggatgacgactcacag
- - - - - - - - - - GCTGGA