1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTGTGGAGGTTGAGGTCAATGGGGTGAAGCAGAAGAGTGGAGTGCTGATAAAGAAATGCAGgtaagacggacgattcaactgtgttcgtcttggatttcaagcgagattcagtaaaaaattcagaaaacattcatctccgtttcag
species | Oryza sativa |
transcript | LOC_Os08g02210.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGAAGCAGAAGAGTGGAGTGCTGATAAAGAAATGCAG GTACCTGGAGAACAGCGGCTGCGTCGGAATGTGCGTCAACATGTGCAAAATEST: gi|38471092|gb|CF955223.1|CF955223
genomic: GTGAAGCAGAAGAGTGGAGTGCTGATAAAGAAATGCAGgtaagacgga ... tccgtttcagGTACCTGGAGAACAGCGGCTGCGTCGGAATGTGCGTCAACATGTGCAAAAT
EST: GAGGTCAATGGGGTGAAGCAGAAGAGTGGAGTGCTGATAAAGAAATGCAG GTACCTGGAGAACAGCGGCTGCGTCGGAATGTGCGTCAACATGTGCAAAAT
genomic: GAGGTCAATGGGGTGAAGCAGAAGAGTGGAGTGCTGATAAAGAAATGCAGgtaagacgga ... tccgtttcagGTACCTGGAGAACAGCGGCTGCGTCGGAATGTGCGTCAACATGTGCAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTGGAGGTTGAGGTCAATGGGGTGAAGCAGAAGAGTGGAGTGCTGATAAAGAAATGCAGgtaagacggacgattcaactgtgttcgtcttggatttcaagcgagattcagtaaaaaattcagaaaacattcatctccgtttcag
- - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA