Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCACCAGAAGCGCCATGGCCGGCGCCTGGACTACGAGGAGCGCAAGCGCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagactgtttatattccccccccccctcttctgttcaattttttttggtgcgtttctgttgctgatgcgcgcgcgtttgttctgtggcag

Basic information

species Oryza sativa
transcript LOC_Os07g47580.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g47580.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G009876_T01 (Zea mays), 5'ss of exon 2
GCTTCACCAGAAGCGCCATGGCCGGCGCCTGGACTACGAGGAGCGCAAGCGCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagactg-tttatattccccccccccctcttctgttcaattttttttggtgcgtttctgttgctgatgcgcgcgcgt-ttgttctgtggcag
||| ||||||||||||||||||  |||||||||| |||| ||||||||||||||||| | ||| ||||||||||||| ||| || | |||||||||  | ||| |   |||   | |  |       | ||  ||  |||   || || ||  || |   |||||| |||||  | || |  |||| |||| | ||
GCTGCACCAGAAGCGCCATGGCAAGCGCCTGGACCACGAAGAGCGCAAGCGCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttctgacctctgattagtttacgcccttttggtt---ttgttgttcatgtgcccctgttgttgatgatcacgtgccttgtgctgttgtag

upper sequence: LOC_Os07g47580.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G174204_T01 (Zea mays), 5'ss of exon 2
GCTTCACCAGAAGCGCCATGGCCGGCGCCTGGACTACGAGGAGCGCAAGCGCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagactgtttatattccccccccccctcttctgttcaattttttttggtgcgtttctgttgctgatgcgcgcgcgt-ttgttctgtggcag
||||||||||||||||||||||  |||||||||| |||||||||||||||||||||| | ||||||||||||||||| ||| || | ||| |||||  | ||| |   ||| |   ||  |       |  | | |      ||  | ||  || |   |||||| |||||  | || |  |||| |||  ||||
GCTTCACCAGAAGCGCCATGGCAAGCGCCTGGACCACGAGGAGCGCAAGCGCAAGCGCGAGGCGCGCGAGGTGCACAGGCGCTCGAAGGACGCCCGCAATgtgcggttctgatctgataacaagtttacgcccttttcggctttgctgttcatgtgcgcctgttgttgatgatcacgtgccttgtgctgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87008746|gb|CI302901.1|CI302901
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|58689868|gb|CK078555.1|CK078555
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|33653812|gb|CF276426.1|CF276426
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|88395389|gb|CI611306.1|CI611306
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|88302583|gb|CI668429.1|CI668429
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|33688902|gb|CF317141.1|CF317141
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|86848058|gb|CI290577.1|CI290577
EST:     CAAGCGGGCGGCGCGCGAGGTGCACAAGCGANTCCAGG-ATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: CAAGCGGGCGGCGCGCGAGGTGCACAAGCGA-TCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|218487556|gb|FG947559.1|FG947559
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|88394705|gb|CI622579.1|CI622579
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|218486392|gb|FG950823.1|FG950823
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|12622982|gb|AU173195.1|AU173195
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGTTGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|218488945|gb|FG960620.1|FG960620
EST:     CAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGTATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: CAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGG-ATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|88351380|gb|CI627396.1|CI627396
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|218483549|gb|FG959691.1|FG959691
EST:     CGGGCGGCGCGCGAGGTGCAC-AGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: CGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|29668015|gb|CB664290.1|CB664290
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|33813020|gb|CF332400.1|CF332400
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|87011090|gb|CI287767.1|CI287767
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|218489207|gb|FG951304.1|FG951304
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|218490089|gb|FG957774.1|FG957774
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         A
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcag-
EST: gi|218490089|gb|FG957774.1|FG957774
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         A
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcag-
EST: gi|33814059|gb|CF332914.1|CF332914
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|58681353|gb|CK070040.1|CK070040
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|88333766|gb|CI643798.1|CI643798
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|88570881|gb|CI662254.1|CI662254
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|33658076|gb|CF280690.1|CF280690
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCTATCCAGGGATGCCCGGCAG                         TTACTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|58661138|gb|CK049818.1|CK049818
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGTATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|88330377|gb|CI633584.1|CI633584
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|88364720|gb|CI612535.1|CI612535
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|33657881|gb|CF280495.1|CF280495
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTACTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|86887864|gb|CI297975.1|CI297975
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|33794028|gb|CF322904.1|CF322904
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|88851570|gb|CI671010.1|CI671010
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|218480798|gb|FG956053.1|FG956053
EST:     GGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|38469043|gb|CF953174.1|CF953174
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|33692111|gb|CF320350.1|CF320350
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|88399306|gb|CI618496.1|CI618496
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|58678013|gb|CK066700.1|CK066700
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|33809375|gb|CF330567.1|CF330567
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
EST: gi|88330904|gb|CI638312.1|CI638312
EST:     GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAG                         TTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG
genomic: GCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 52 (upstream exon), 75 (downstream exon)
Score: 89

GCTTCACCAGAAGCGCCATGGCCGGCGCCTGGACTACGAGGAGCGCAAGCGCAAGCGGGCGGCGCGCGAGGTGCACAAGCGATCCAGGGATGCCCGGCAGgtgagagact ... tctgtggcagTTGCTTGGTGCTAAGGGTAAGAGGTTCGCCAAGAAGCGGTATGCCGAGAAGGCACAGATGAAGAAGAC




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