1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTCTTGGACCTTACTCGACCAGCATTAAGAAGGTTGAGAAGGAAATCAAAGAGATGGCGAAGAAGATAAATGATCTCTGTGgtgtgtgctcgtcaaattctttgcttctcaatttaaatataactgtgctacaggtgcttgcgctattccaacttgctgcaacatgctcatctgaactgttaatgaattgcag
species | Oryza sativa |
transcript | LOC_Os06g09290.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTTGAGAAGGAAATCAAAGAGATGGCGAAGAAGATAAATGATCTCTGTG GAATTAAAGAGTCTGACACTGGATTGGCTCCACCTAGCCAGTGGGACCTGGEST: gi|29666226|gb|CB662501.1|CB662501
genomic: GGTTGAGAAGGAAATCAAAGAGATGGCGAAGAAGATAAATGATCTCTGTGgtgtgtgctc ... tgaattgcagGAATTAAAGAGTCTGACACTGGATTGGCTCCACCTAGCCAGTGGGACCTTG
EST: GGTTGAGAAGGAAATCAAAGAGATGGCGAAGAAGATAAATGATCTCTGTG GAATTAAAGAGTCTGACACTGGATTGGCTCCACCTAGCCAGTGGGACCTTG
genomic: GGTTGAGAAGGAAATCAAAGAGATGGCGAAGAAGATAAATGATCTCTGTGgtgtgtgctc ... tgaattgcagGAATTAAAGAGTCTGACACTGGATTGGCTCCACCTAGCCAGTGGGACCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCTTGGACCTTACTCGACCAGCATTAAGAAGGTTGAGAAGGAAATCAAAGAGATGGCGAAGAAGATAAATGATCTCTGTGgtgtgtgctcgtcaaattctttgcttctcaatttaaatataactgtgctacaggtgcttgcgctattccaacttgctgcaacatgctcatctgaactgttaatgaattgcag
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG