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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGGTCGCGCGCTCCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcgcaagaactcttatctatgatgccttgatccttcgtgtaatttcgttgatgatttcgtgttgtttgtttgcgcgcag

Basic information

species Oryza sativa
transcript LOC_Os05g49030.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g49030.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G022619_T02 (Zea mays), 5'ss of exon 2
TGGTGGGTCGCGCGCTCCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcgcaagaact----cttat-ctatgatgccttgatcctt------cgtgtaatttcgttgatgatttcgtgttgtttgtttgcgcgcag
|||||||||||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||  ||| || |    ||    ||||| ||| ||| |  ||||  ||      |||    | |   ||| | |  ||| ||| ||| ||||| ||||
TGGTGGGTCGCGCGCTGCCGACCCCGACCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACTAACGAGGTTCGCGCCAAGTCGAAGTTCTGgtcagtgccgtacaccctggggcttatgctaggattctctgattgtttttttccgttgcgtatttctgacggtggcgtcttgcttgcttgcgtgcag

upper sequence: LOC_Os05g49030.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G113720_T01 (Zea mays), 5'ss of exon 2
TGGTGGGTCGCGCGCTCCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcgcaagaactcttatctatgatgccttgatcc---ttcgtgtaatttcgt-----tgatgatttcgtgttgtttgtttgcgcgcag
|||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||    |   ||||    | ||| |  | |  ||    | ||| |   |||||     ||| | |  ||| | | ||| ||||||||||
TGGTGGGTCGCGCGCTGCCGACCCCAACCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCCAAGTTCTGgtcagtgcattacacactcgggccgatgctagcattgtctgattgcgttttggttcgtatttctgacggtggcgtctcgcttgattgcgcgcag

upper sequence: LOC_Os05g49030.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S56_243V6.3 (Physcomitrella patens), 5'ss of exon 2
TGGTGGGTCGCGCGCTCCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcgcaagaactcttatctatgatgccttgatccttcgtg-taatttcgttgatgatttcgtgttgtttgtttgcgcgcag-------------
|||| || || || || || ||  ||  | |||||  ||| |||   |||||||||||||| |||||||| ||||| || ||||||||||| ||||||||||  ||  | |   ||    ||| | ||||     ||   |   || |||  | | |    ||||     ||   |     |    |             
TGGTAGGGCGGGCCCTGCCCACTGCCACCAATGAGACCCCGAAGGCTTACCGCATGAAGCTATGGGCCACTAACGAAGTGCGCGCCAAGTCGAAGTTCTGgtaagtcactcttcaaaaaatatttgtgatcttcagaaattatatggtaacctggcttggtatttatgtctgagagagcaagaattgcctcctggccagt

upper sequence: LOC_Os05g49030.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S74_193V6.2 (Physcomitrella patens), 5'ss of exon 2
TGGTGGGTCGCGCGCTCCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgt-tggtgtcgcaa---gaactcttatctatgatgccttgatccttcgtgtaatttcgttgatgatttcgtgtt--gtttgtttgcgcgcag--------
|||| || || || || || ||| |   | |||||   || |||   ||||||||||||||||||||||||||||| || ||||||||||| |||||||||| |||||| | |     |  ||  |   |     |  |    ||| |||||||| |   ||    ||||   |  ||   | || ||            
TGGTTGGGCGGGCCCTTCCTACCGCGACCAATGAGACACCTAAGGCTTACCGCATGAAGCTCTGGGCCACCAACGAAGTGCGCGCCAAGTCTAAGTTCTGgtatggtgttgtagtttaagttcgaaaagaaacgacgctctcgctttgtgtaattccagagaatgcttcgaaattggtggatctgtgctttagatgatga

upper sequence: LOC_Os05g49030.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S5_178V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGTGGGTCGCGCGCTCCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcgcaagaactcttatctatgatgccttgatc--cttcgtgtaatttcgttgatgatttcgtgttgtttgtttgcgcgcag-------------
||||||| || || || || ||  |   | |||||  ||| ||    |||||||||||||| ||||| ||||| || |||||||||||||| || |||||||   ||| |       ||     |   |  | ||||    |    |||||| || ||     | || | ||  |   |||    |               
TGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGGCCCCTAAAGCTTACCGCATGAAGCTTTGGGCGACCAATGAAGTCCGCGCCAAGTCTAAATTCTGgt-actgttgtgttgcttcagtcttgaaagtcattgaggagcacattgtaatgtctttctctgtgtcttctttgtgtcttgaagacgacgaaattaggtgt

upper sequence: LOC_Os05g49030.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ38689 (Selaginella moellendorffii), 5'ss of exon 2
TGGTGGGTCGCGCGCTCCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgt---tggtgtcgcaagaactcttatctatgatgccttgatccttcgtgtaatttcgttgatgatttcgtgttgtttgtttgcgcgcag
|||| ||  | ||    || || |||| | |||||||||| ||||| ||||| |||||||||||||||  | |||| || |||||||||||||| |||||||   ||| ||||   | |    |   |    | || |  ||  |||  | |  |   |     | | |                    
TGGTCGGGAGAGCTACTCCCACTCCCGACAATGAGCACCCAAAGATGTACCGGATGAAGCTCTGGGCCGGCGACGAAGTGCGCGCCAAGTCCAAATTCTGgtgagtggagtcgattggatcgatcgatccatttccattttctctcgatttacctttctttcactctag--------------------

upper sequence: LOC_Os05g49030.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ31458 (Selaginella moellendorffii), 5'ss of exon 2
TGGTGGGTCGCGCGCTCCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggt---gtcgcaagaactcttatctatgatgccttgatccttcgtgtaatttcgttgatgatttcgtgttgtttgtttgcgcgcag
|||| ||  | ||    || || |||| | |||||||||| ||||| ||||| |||||||||||||||  | |||| || |||||||||||||| |||||||  ||   ||||   | |    |   |    | || |  ||  |||  | |  |   |     | | |                    
TGGTCGGAAGAGCTACTCCCACTCCCGACAATGAGCACCCAAAGATGTACCGGATGAAGCTCTGGGCCGGCGACGAAGTGCGCGCCAAGTCCAAATTCTGgtgagtcgagtcgattggatcgatcgatccatttccattttctctcgatttacctttctttcactctag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88762797|gb|CI772353.1|CI772353
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|27577222|gb|CA999916.1|CA999916
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|33809687|gb|CF330733.1|CF330733
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88570392|gb|CI661765.1|CI661765
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|66913967|gb|CX100815.1|CX100815
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|58612568|gb|CK040280.1|CK040280
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACGGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88316271|gb|CI620549.1|CI620549
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88360864|gb|CI625170.1|CI625170
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAACAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88724283|gb|CI747542.1|CI747542
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|8334930|gb|BE039914.1|BE039914
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|25802968|gb|CA758929.1|CA758929
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|27577554|gb|CB000249.1|CB000249
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88760669|gb|CI770225.1|CI770225
EST:     CGCATGAAGCTCTGGG-CACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|163919924|gb|EG710366.1|EG710366
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88342388|gb|CI645910.1|CI645910
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88310812|gb|CI659415.1|CI659415
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|11442991|gb|BF430881.1|BF430881
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|117216825|gb|CT845220.1|CT845220
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAAGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|58589076|gb|CF987384.1|CF987384
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGACGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88695561|gb|CI737599.1|CI737599
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88351680|gb|CI617405.1|CI617405
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|218481926|gb|FG946002.1|FG946002
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88745043|gb|CI768403.1|CI768403
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|27577758|gb|CB000453.1|CB000453
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|86593219|gb|CI255681.1|CI255681
EST:     ACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: ACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|58689508|gb|CK078195.1|CK078195
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88340869|gb|CI637029.1|CI637029
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|27576843|gb|CA999537.1|CA999537
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|58691919|gb|CK080606.1|CK080606
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|218505513|gb|FG963988.1|FG963988
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|426271|gb|D22132.1|D22132
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|38565641|gb|CK085094.1|CK085094
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88377724|gb|CI605559.1|CI605559
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|27577519|gb|CB000214.1|CB000214
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|163925551|gb|EG715396.1|EG715396
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|58690967|gb|CK079654.1|CK079654
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88735915|gb|CI757490.1|CI757490
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|163923318|gb|EG711089.1|EG711089
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|38481748|gb|CF965823.1|CF965823
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|33663305|gb|CF294272.1|CF294272
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88760652|gb|CI770208.1|CI770208
EST:     AGCATGAAGCTCTGGG-CACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88740617|gb|CI764125.1|CI764125
EST:     CGCATGAAGCTCTGGG-CACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|88740217|gb|CI763725.1|CI763725
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
EST: gi|325493467|gb|JG457991.1|JG457991
EST:     CGTATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 64 (downstream exon)
Score: 121

TGGTGGGTCGCGCGCTCCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcg ... ttgcgcgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGGGTCGCGCGCTCCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgttggtgtcgcaagaactcttatctatgatgccttgatccttcgtgtaatttcgttgatgatttcgtgttgtttgtttgcgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC