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GGCAAAGTGAAGATCGCGGAGCATATATTGACTGGTCACAAGGTGGCAATCAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactgatccctttgacccttttgttcaagatgtttgtagaatatatacgaaatgatagatacttgggtaaatatttaagatccatcacatgtttc...
species | Oryza sativa |
transcript | LOC_Os05g45420.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAG TTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCAEST: gi|58690653|gb|CK079340.1|CK079340
genomic: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactg ... tcctttgcagTTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCA
EST: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAG TTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTCEST: gi|58675163|gb|CK063850.1|CK063850
genomic: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactg ... tcctttgcagTTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTC
EST: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAA-G TTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTCEST: gi|27576377|gb|CA999071.1|CA999071
genomic: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactg ... tcctttgcagTTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTC
EST: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAG TTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTCEST: gi|88722948|gb|CI746458.1|CI746458
genomic: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactg ... tcctttgcagTTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTC
EST: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAG TTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTCEST: gi|58663248|gb|CK051934.1|CK051934
genomic: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactg ... tcctttgcagTTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTC
EST: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAG TTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTCEST: gi|58680130|gb|CK068817.1|CK068817
genomic: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactg ... tcctttgcagTTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTC
EST: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAG TTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTCEST: gi|58674603|gb|CK063290.1|CK063290
genomic: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactg ... tcctttgcagTTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTC
EST: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAG TTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTCEST: gi|29680933|gb|CB677208.1|CB677208
genomic: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactg ... tcctttgcagTTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTC
EST: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAG TTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTCEST: gi|33675614|gb|CF303853.1|CF303853
genomic: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactg ... tcctttgcagTTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTC
EST: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAG TTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTC
genomic: CAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactg ... tcctttgcagTTAAAAGAGAAATCAAGATACTTAGATTATTTATGCACCCACATATCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAAAGTGAAGATCGCGGAGCATATATTGACTGGTCACAAGGTGGCAATCAAGATCCTCAATCGCCGTAAGATCAAGAGCATGGAGATGGAAGAGAAAGgttggtactgatccctttgacccttttgttcaagatgtttgtagaatatatacgaaatgatagatacttgggtaaatatttaagatccatcacatgtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA