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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaattcccacaccccccctctaatcgctgcgcgattgctggtttgtagatcgattggtttacgcctattcgtcgccgtgttttgattatgttt...

Basic information

species Oryza sativa
transcript LOC_Os05g38550.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g38550.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G012052_T01 (Zea mays), 5'ss of exon 2
TCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaattcccacaccccccctctaatcgctgcgcgattgct---ggtttgtagatcgattggtttacgcctattcgtcgccgtgttttgattatgttt
| |||||||||||||||||||||||||| || |||||||| ||||| |||||| | |||||||||||||||||||||||||| ||||| || ||||| |||| ||||| | |      ||  | || || |  |||| | ||||||   ||  | ||||| |  || || | |  |   |   | ||| |   | | | ||| 
TTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACAGCAACATCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagttcgaattttg--cctgctctatactgactgcacaattgctcttgggatatagattgtatgcttgatgggtgcgcaaagtcgtttcaggttcaggtt-

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G007276_T03 (Zea mays), 5'ss of exon 2
TCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaattcccacaccccccctctaatcgctgcgcgattgctggtttgtagatcgattggtttacgcctattcgtcgccgtgttttgattatgttt
| |||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||| | |     |  |   ||  ||||    ||                                                              
TTGCGAAGAACCCCGTGGATGGGTTCTCCGCAGGGCTTGTAGACGATAGCAACGTCTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGACACCCTATAgtgagttcgagtttacgaatcaagcttgaatcatcccggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 5'ss of exon 2
lower sequence: EDP03036 (Chlamydomonas reinhardtii), 5'ss of exon 2
TCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaattcccac-accccccctctaatcgctgcgcgattgctggtttgtagatcgattggtttacgcctattcgtcgccgtgttttgattatgttt--
|| | | ||||||||||||||| |||||||| || || || || ||||||||||||||||||||||||||||||||||| || || || || || || |||||||||      |||  || |  |  ||    || | | |  |  |  |||||         ||     |  |     | ||  ||||| |  || |     
TCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACTCTAgtaagtttggaagccatgacgcggcggctcgctgccgtgggcct-ttactttgtg--ctacccgggacgagttttcattttgctttgtttgggctagggagag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55414096|gb|CV726472.1|CV726472
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|55442235|gb|CV734437.1|CV734437
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33692575|gb|CF320814.1|CF320814
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|3760645|gb|C97899.1|C97899
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33655770|gb|CF278384.1|CF278384
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|29680264|gb|CB676539.1|CB676539
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|88430899|gb|CI571889.1|CI571889
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33810432|gb|CF331103.1|CF331103
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|29673156|gb|CB669431.1|CB669431
EST:     AACGTGTTCTAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCATAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|3760646|gb|C97900.1|C97900
EST:     CCATCATCGNCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCCTTCCCCCAGAATTATCCGA
genomic: CCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGA-CCTTCCCCCAGAATTATCCGA
EST: gi|33653883|gb|CF276497.1|CF276497
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAACTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|58679873|gb|CK068560.1|CK068560
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|55409814|gb|CV722190.1|CV722190
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|88388205|gb|CI627744.1|CI627744
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33658680|gb|CF281293.1|CF281293
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|55827422|gb|AU030093.2|AU030093
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33653639|gb|CF276253.1|CF276253
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|38470738|gb|CF954869.1|CF954869
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|88390199|gb|CI605652.1|CI605652
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33658073|gb|CF280687.1|CF280687
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|88736853|gb|CI760361.1|CI760361
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|58590916|gb|CF989224.1|CF989224
EST:     AACGTGTTCGAGTGGCAGGTGACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|32948017|gb|BP184589.1|BP184589
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|88288557|gb|CI663346.1|CI663346
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33687042|gb|CF315281.1|CF315281
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33690680|gb|CF318919.1|CF318919
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|88570068|gb|CI661243.1|CI661243
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|55431282|gb|CV728654.1|CV728654
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|29688854|gb|CB685129.1|CB685129
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|8857894|gb|AU095212.1|AU095212
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|86822730|gb|CI251810.1|CI251810
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33659205|gb|CF281818.1|CF281818
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|29680263|gb|CB676538.1|CB676538
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33658853|gb|CF281466.1|CF281466
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|66916172|gb|CX103020.1|CX103020
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33658681|gb|CF281294.1|CF281294
EST:     ATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: ATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|4880952|gb|AU065251.1|AU065251
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|87023663|gb|CI286414.1|CI286414
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|29616092|gb|CB621104.1|CB621104
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33662052|gb|CF293019.1|CF293019
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|29685176|gb|CB681451.1|CB681451
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33655754|gb|CF278368.1|CF278368
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33691669|gb|CF319908.1|CF319908
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|29684701|gb|CB680976.1|CB680976
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|29685177|gb|CB681452.1|CB681452
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|58673748|gb|CK062434.1|CK062434
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|33654768|gb|CF277382.1|CF277382
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATATCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|29684702|gb|CB680977.1|CB680977
EST:     AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: AACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
EST: gi|29688855|gb|CB685130.1|CB685130
EST:     GCCCGCCCGATACCCTGTA                         TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA
genomic: GCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 75 (downstream exon)
Score: 229

TCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaa ... gtttctgcagTGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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TCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTGTAgtaagttcaattcccacaccccccctctaatcgctgcgcgattgctggtttgtagatcgattggtttacgcctattcgtcgccgtgttttgattatgttt

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