1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCAAGTGTACATGGCGAGGGAGACGGAGACGCAGGAGATCGTCGCGCTCAAGAAGATCCGCATGGATAACGAGCGCGAGGGCgtaagtatccgtgcccctgtttccggcgattttgtgtctctctctctttttttttggtttgattgatgtattcttcatcgttacggtatctggcgtag
species | Oryza sativa |
transcript | LOC_Os05g32360.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGAGATCGTCGCGCTCAAGAAGATCCGCATGGATAACGAGCGCGAGGGC TTCCCCATCACTGCAATCCGCGAAATCAAAATCCTCAAGAAGCTGCACCACEST: gi|88351784|gb|CI654327.1|CI654327
genomic: AGGAGATCGTCGCGCTCAAGAAGATCCGCATGGATAACGAGCGCGAGGGCgtaagtatcc ... tctggcgtagTTCCCCATCACTGCAATCCGCGAAATCAAAATCCTCAAGAAGCTGCACCAC
EST: AGGAGATCGTCGCGCTCAAGAAGATCCGCATGGATAACGAGCGCGAGGGC TTCCCCATCACTGCAATCCGCGAAATCAAAATCCTCAAGAAGCTGCACCACEST: gi|300216016|gb|HO088642.1|HO088642
genomic: AGGAGATCGTCGCGCTCAAGAAGATCCGCATGGATAACGAGCGCGAGGGCgtaagtatcc ... tctggcgtagTTCCCCATCACTGCAATCCGCGAAATCAAAATCCTCAAGAAGCTGCACCAC
EST: AGGAGATCGTCGCGCTCAAGAAGATCCGCATGGATAACGAGCGCGAGGGC TTCCCCATCAATGCAATCCGCGAAATCAAAATCCTCAAGAAGCTGCACCACEST: gi|218484487|gb|FG944130.1|FG944130
genomic: AGGAGATCGTCGCGCTCAAGAAGATCCGCATGGATAACGAGCGCGAGGGCgtaagtatcc ... tctggcgtagTTCCCCATCACTGCAATCCGCGAAATCAAAATCCTCAAGAAGCTGCACCAC
EST: AGGAGATCGTCGCGCTCAAGAAGATCCGNATGGATAACGAGCGCGAGGGC TTCCCCATCACTGCAATCCGCGAAATCAAAATCCTCAAGAAGCTGCACCAC
genomic: AGGAGATCGTCGCGCTCAAGAAGATCCGCATGGATAACGAGCGCGAGGGCgtaagtatcc ... tctggcgtagTTCCCCATCACTGCAATCCGCGAAATCAAAATCCTCAAGAAGCTGCACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGTGTACATGGCGAGGGAGACGGAGACGCAGGAGATCGTCGCGCTCAAGAAGATCCGCATGGATAACGAGCGCGAGGGCgtaagtatccgtgcccctgtttccggcgattttgtgtctctctctctttttttttggtttgattgatgtattcttcatcgttacggtatctggcgtag
- - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA