1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAAATCTCATGGAGGAAATAGTAAGGCGGCTCATCCATCTGGCAATGGAGAAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactattgtcatatatacagtattatccatatatcatgatgctaccaatatcatttgactcttgttctggtttttattattgcttaccattttatg...
species | Oryza sativa |
transcript | LOC_Os03g58480.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCACEST: gi|58597056|gb|CK007584.1|CK007584
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
EST: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCACEST: gi|58657562|gb|CK046242.1|CK046242
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
EST: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCACEST: gi|58665629|gb|CK054315.1|CK054315
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
EST: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCACEST: gi|33675922|gb|CF304161.1|CF304161
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
EST: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCACEST: gi|58657415|gb|CK046095.1|CK046095
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
EST: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCEST: gi|58667605|gb|CK056291.1|CK056291
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTC
EST: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCACEST: gi|27554048|gb|CA997948.1|CA997948
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
EST: AAAATTCTGGTGATAATATCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGAATGCTCAGCCTGATCATATGCTTCACEST: gi|33802668|gb|CF327205.1|CF327205
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
EST: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCACEST: gi|33676020|gb|CF304259.1|CF304259
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
EST: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCACEST: gi|33675598|gb|CF303837.1|CF303837
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
EST: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCACEST: gi|29628404|gb|CB633415.1|CB633415
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
EST: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAG ACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
genomic: AAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactat ... attattgcagACTGCACCGATTACTCCCAAGAAGATTGCACAGCCTGATCATATGCTTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATCTCATGGAGGAAATAGTAAGGCGGCTCATCCATCTGGCAATGGAGAAAATTCTGGTGATAAGAGCAACTCCTCTCCAGCAAGTTTGACAAAGAAGgtatgactattgtcatatatacagtattatccatatatcatgatgctaccaatatcatttgactcttgttctggtttttattattgcttaccattttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG