1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCGgtgagttgattggtttgatcgtacggtttggtcgctgcttatagcactaggattagtcgtggtgagcttggaagagctaatttctcgtggcatgccgctt...
species | Oryza sativa |
transcript | LOC_Os03g18310.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAGGAGGCCGTCTTGTGGGGGCTCAGTTGCATCGTCCCTTCTCACCGCG AAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATTEST: gi|88333451|gb|CI640483.1|CI640483
genomic: GGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCGgtgagttgat ... tttttgttagAAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATT
EST: GGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCG AAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATTEST: gi|88313120|gb|CI592404.1|CI592404
genomic: GGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCGgtgagttgat ... tttttgttagAAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATT
EST: GGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCG AAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATTEST: gi|88354896|gb|CI615777.1|CI615777
genomic: GGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCGgtgagttgat ... tttttgttagAAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATT
EST: GGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCG AAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATTEST: gi|2428327|gb|C72790.1|C72790
genomic: GGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCGgtgagttgat ... tttttgttagAAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATT
EST: GGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCG AAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATTEST: gi|88371525|gb|CI602703.1|CI602703
genomic: GGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCGgtgagttgat ... tttttgttagAAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATT
EST: GGAGGAGGCCGCCTTGTGGGGGCTCAGCTGAATCGTCCCTTCTCACCGCG AAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATT
genomic: GGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCGgtgagttgat ... tttttgttagAAACACTGGATTTCAAGTTTCTATTGAAGCCAAAAGACAATAGCTCACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCTGATGGAGCAGGAGGAGGCCGCCTTGTGGGGGCTCAGCTGCATCGTCCCTTCTCACCGCGgtgagttgattggtttgatcgtacggtttggtcgctgcttatagcactaggattagtcgtggtgagcttggaagagctaatttctcgtggcatgccgctt
- - - - - - - GGAGGA
- - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - AGCTGC