1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AATTGTACAGCTGGTCATAGTAGGGTAAAGAAGTTGCTCGCCTGTAAGCACAGGAAAGTTGCTCCAGCCAGGATGCACAAAGGAGATCTTTCCTATAGTGgtgagcattgtgagatcccattcaccttttccttttttgaggagcactgcattgatggcactcatattcaaacctgcttactctattcttacttgagttcgttgatcctgctag
species | Oryza sativa |
transcript | LOC_Os03g16700.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGGAAAGTTGCTCCAGCCAGGATGCACAAAGGAGATCTTTCCTATAGTG ATGTTGACCGGAAGCCTTCTTTCCGCAACAAGAAAATGTATTATACACGACEST: gi|163926542|gb|EG712406.1|EG712406
genomic: CAGGAAAGTTGCTCCAGCCAGGATGCACAAAGGAGATCTTTCCTATAGTGgtgagcattg ... atcctgctagATGTTGACCGGAAGCCTTCTTTCCGCAACAAGAAAATGTATTATACACGAC
EST: CAGGAAAGTTGCTCCAGCCAGGATGCACAAAGGAGATCTTTCCTATAGTG ATGTTGACCGGAAGCCTTCTTTCCGCAACAAGAAAATGTATTATACACEST: gi|29630486|gb|CB635495.1|CB635495
genomic: CAGGAAAGTTGCTCCAGCCAGGATGCACAAAGGAGATCTTTCCTATAGTGgtgagcattg ... atcctgctagATGTTGACCGGAAGCCTTCTTTCCGCAACAAGAAAATGTATTATACAC
EST: CAGGAAAGTTGCTCCAGCCAGGATGCACAAAGGAGATCTTTCCTATAGTG ATGTTGACCGGAAGCCTTCTTTCCGCA-CAAGAAAATGTATTATAEST: gi|29627240|gb|CB632251.1|CB632251
genomic: CAGGAAAGTTGCTCCAGCCAGGATGCACAAAGGAGATCTTTCCTATAGTGgtgagcattg ... atcctgctagATGTTGACCGGAAGCCTTCTTTCCGCAACAAGAAAATGTATTATA
EST: AGGAAAAGT-GCTCCAGCCAGGATGCACAAAAGAGATCTTTCCTATAGTG ATGTTGACCGGAAGCCTTCTTTCCGCEST: gi|218487578|gb|FG960601.1|FG960601
genomic: AGGAAA-GTTGCTCCAGCCAGGATGCACAAAGGAGATCTTTCCTATAGTGgtgagcattg ... atcctgctagATGTTGACCGGAAGCCTTCTTTCCGC
EST: CAGGAAAGTTGCTCCAGCCAGGATGCACAAAGGAGATCTTTCCTATAGTG ATGTAGACCGGAAGCCTTCTTTCCGCAACAAGAAAATGTATTATACACGAC
genomic: CAGGAAAGTTGCTCCAGCCAGGATGCACAAAGGAGATCTTTCCTATAGTGgtgagcattg ... atcctgctagATGTTGACCGGAAGCCTTCTTTCCGCAACAAGAAAATGTATTATACACGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGTACAGCTGGTCATAGTAGGGTAAAGAAGTTGCTCGCCTGTAAGCACAGGAAAGTTGCTCCAGCCAGGATGCACAAAGGAGATCTTTCCTATAGTGgtgagcattgtgagatcccattcaccttttccttttttgaggagcactgcattgatggcactcatattcaaacctgcttactctattcttacttgagttcgttgatcctgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC