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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACGGCTTCGACAAGGGCGACATCGGCCGCCTCTTCATCGCCGGCTTCGGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCAgtacgtttcttcttcatcgatttcctctccgattgtcacagattgtgccccgcgctgagactgacagaaaaatctgtgtgtttcag

Basic information

species Oryza sativa
transcript LOC_Os03g02380.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02380.2 (Oryza sativa), 5'ss of exon 2
lower sequence: EDO98756 (Chlamydomonas reinhardtii), 5'ss of exon 4
AGTACGGCTTCGACAAGGGCGACATCGGCCGCCTCTTCATCGCCGGCTTCGGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCAgtacgtttcttctt-catcgatttcctctccgattgtcacagattgtgccccgcgctgagactgacagaaaaatctgtgtgttt---cag-----------
                    |||||||||||||| |||||||| |||||||| ||||||||| ||||||||||| | ||||| || || |||||||||||||  ||     | | |    |   ||    |  | | | | |   || |     |||| |   |       ||   | |   ||   |||           
--------------------GACATCGGCCGCCTGTTCATCGCGGGCTTCGGCTCCTCCATGATCTTCGGCACCGTGGTCGGGTCCCTGGCCGACAAGCAgtgagtgcggccctgcgctcagggcccggtccctcgccgcgggg-gtccagaaagctggggagggggtgtcaactcgggaagttgtccagcgaatgtagga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33679376|gb|CF307615.1|CF307615
EST:     GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCA                         GGGGAGGAAGAAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCT
genomic: GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCAgtacgtttct ... tgtgtttcagGGGGAGGAAGA-GGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCT
EST: gi|58665406|gb|CK054092.1|CK054092
EST:     GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCA                         GGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
genomic: GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCAgtacgtttct ... tgtgtttcagGGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
EST: gi|40490542|gb|BX899979.1|BX899979
EST:     GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCA                         GGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
genomic: GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCAgtacgtttct ... tgtgtttcagGGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
EST: gi|29656297|gb|CB652572.1|CB652572
EST:     GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCA                         GGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
genomic: GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCAgtacgtttct ... tgtgtttcagGGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
EST: gi|29614295|gb|CB619308.1|CB619308
EST:     GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCA                         GGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
genomic: GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCAgtacgtttct ... tgtgtttcagGGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
EST: gi|88351131|gb|CI623353.1|CI623353
EST:     GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGAAAAGCA                         GGGGAGGAAGAGGGCGTGCATCACCTAATGCATCAGCTACATCCTCA
genomic: GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCAgtacgtttct ... tgtgtttcagGGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCA
EST: gi|88399770|gb|CI585689.1|CI585689
EST:     GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCA                         GGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
genomic: GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCAgtacgtttct ... tgtgtttcagGGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
EST: gi|58672276|gb|CK060962.1|CK060962
EST:     GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCA                         GGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
genomic: GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCAgtacgtttct ... tgtgtttcagGGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
EST: gi|58664876|gb|CK053562.1|CK053562
EST:     GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCA                         GGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG
genomic: GGATCCTCCATGCTCTTCGGCACCATCGTCGGATCACTCGCCGACAAGCAgtacgtttct ... tgtgtttcagGGGGAGGAAGAGGGCGTGCATCACCTACTGCATCAGCTACATCCTCAGCTG