1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCAAGCCAACCTCCTCCCGCAGGCAGCAACTGCTGCGTGAGTGCCCCATACTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGgtaatgataatagaattgaatctttctacgtttgttctctgtgacaaaaacttgttatggcagttttccctgattgtttcatctgtcacctgaaataaca...
species | Oryza sativa |
transcript | LOC_Os03g01890.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAG GTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAGEST: gi|29642722|gb|CB647729.1|CB647729
genomic: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGgtaatgataa ... gttgctctagGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAG
EST: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAG GTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAGEST: gi|58663402|gb|CK052088.1|CK052088
genomic: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGgtaatgataa ... gttgctctagGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAG
EST: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAG GTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAGEST: gi|29678473|gb|CB674748.1|CB674748
genomic: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGgtaatgataa ... gttgctctagGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAG
EST: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAG GTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAGEST: gi|88205580|gb|CI205429.1|CI205429
genomic: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGgtaatgataa ... gttgctctagGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAG
EST: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAG GTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAGEST: gi|29678474|gb|CB674749.1|CB674749
genomic: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGgtaatgataa ... gttgctctagGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAG
EST: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAG GTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAG
genomic: CTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGgtaatgataa ... gttgctctagGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAGCCAACCTCCTCCCGCAGGCAGCAACTGCTGCGTGAGTGCCCCATACTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGgtaatgataatagaattgaatctttctacgtttgttctctgtgacaaaaacttgttatggcagttttccctgattgtttcatctgtcacctgaaataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA