1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTTGGTGTATCTAAGACAGCAACCCAGGATGAGCTGAAGAAAGCGTACCGTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggacaaacagttctatatttgtctactcttgaactgttggtttggtttggttgacgttttactttttatggcttggtcag
species | Oryza sativa |
transcript | LOC_Os02g43930.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58655503|gb|CK044183.1|CK044183
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58666150|gb|CK054836.1|CK054836
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58658345|gb|CK051083.1|CK051083
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58601753|gb|CK012281.1|CK012281
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58601372|gb|CK011900.1|CK011900
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: -TGAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58658625|gb|CK047305.1|CK047305
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58663897|gb|CK052583.1|CK052583
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58604589|gb|CK015117.1|CK015117
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58672684|gb|CK061370.1|CK061370
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: ACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|29627563|gb|CB632574.1|CB632574
genomic: ACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|218489299|gb|FG965759.1|FG965759
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58695486|gb|CK084173.1|CK084173
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58664824|gb|CK053510.1|CK053510
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|29619928|gb|CB624940.1|CB624940
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58679094|gb|CK067781.1|CK067781
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTEST: gi|33796281|gb|CF324007.1|CF324007
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCT
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|33795773|gb|CF323756.1|CF323756
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58659104|gb|CK047784.1|CK047784
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTEST: gi|58687630|gb|CK076317.1|CK076317
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCT
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|88343932|gb|CI654968.1|CI654968
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|58660176|gb|CK048856.1|CK048856
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|29683463|gb|CB679738.1|CB679738
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGGEST: gi|29631437|gb|CB636446.1|CB636446
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
EST: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAG TTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
genomic: GTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggac ... gcttggtcagTTTAAAGAATTGGCTCAAGCTTACGAGGTTCTTAATGATCCTGAAAAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGGTGTATCTAAGACAGCAACCCAGGATGAGCTGAAGAAAGCGTACCGTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggacaaacagttctatatttgtctactcttgaactgttggtttggtttggttgacgttttactttttatggcttggtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA