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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACATAAACGCATGCCAAAAAGTTTCTGACAAAGGGATTGAAACTATTACAAGTCTTTGTCCAAACCTTCGGGCCCTTTCTATCTATTGGATTGTTGGgtacaccatttctgaatgttttctttgccatacagccccccttgtttctaattggtggacattttgtttccacag

Basic information

species Oryza sativa
transcript LOC_Os02g17990.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17990.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G055705_T01 (Zea mays), 5'ss of exon 4
TGAACATAAACGCATGCCAAAAAGTTTCTGACAAAGGGATTGAAACTATTACAAGTCTTTGTCCAAACCTTCGGGCCCTTTCTATCTATTGGATTGTTGGgtacaccattt-ctgaatgttttctttgccatacagccccccttgtttctaattggtggacattttgtttccacag
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TGAACCTAAATGCATGTCAGAAGATCTCTGATAAAGGAATTGAAGCTGTTACCAGTCTTTGTCCTAATCTTCAGCGCCTTGCTATCTATTGGATTGTAGGgtatatttcttactgaatgtttactttggtgaata--tgaatttgtttctaattgttggacatttttctgccttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29668175|gb|CB664450.1|CB664450
EST:     TGGATTGTTGG                         ACTGACAGACTTAACCATTAGGCACATTGTGCAGAACTGCAAGCACATAGT
genomic: TGGATTGTTGGgtacaccatt ... gtttccacagACTGACAGACTTAACCATTAGGCACATTGTGCAGAACTGCAAGCACATAGT