Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATCCTTGGACAACAAGGGAAGACTAATGGTGGAAAAGGATTTAAGAATAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCTgtaagtctactttaaacttgcacattctgttattcgatctacttgcagatgttccattattccctctgtttgagaatgttctgtacaactgagagttctt...

Basic information

species Oryza sativa
transcript LOC_Os02g05680.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g05680.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G166145_T01 (Zea mays), 5'ss of exon 3
GGAATCCTTGGACAACAAGGGAAGACTAATGGTGGAAAAGGATTTAAGAATAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCTgtaagtct---actttaaacttgcacattctgttattcgatctacttgcagatgttccattattccctctgtttgagaatgttctgtacaactgagagttctt-
|||||||||||| | |||||| ||| ||||||||||||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |   |||   |||||| | |||||  | |  | | |  ||    ||||| | ||||||    || ||       || |   ||||    | |  || 
GGAATCCTTGGATAGCAAGGGGAGAGTAATGGTGGAAAAGGATTTAAGAGTGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCTgtaagtttttcactcccaacttgta-attctcct-tctgctttgtttatt-atgttactttattcaggttggtttttctcattgtcc-caaccaccattcatta

upper sequence: LOC_Os02g05680.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA12G09920.1 (Glycine max), 5'ss of exon 3
GGAATCCTTGGACAACAAGGGAAGACTAATGGTGGAAAAGGATTTAAGAATAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCTgtaagtctactttaaacttgcacattctgttattcgatctacttgcagatgttccattattccctctgtttgagaatgttctgtacaactga--gagttctt------
| |    |||||  |    |||||  | | ||| ||     | || ||  |    |||   |  ||||||||||||||||| |||||||||||| |||| ||||||  ||||   | | | || || |  | |||    |  |  ||    ||  || |||   | |||||   ||    ||  |||| | |   |||| |       
GAATGATTTGGATGATCTTGGAAGGATTAAGGTAGATGGAAAATTGAGGGTCGTTGGTAGGACAAACATTTTTGCAATTGGAGACATCACAGATGTTCCAgtaagt--acttgtcattggtacctttt--tgttcagctt-ttcaca---attatataattttatatgttttgtaacaaactcaacaagttaccaagttttctgctat

upper sequence: LOC_Os02g05680.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA12G09930.1 (Glycine max), 5'ss of exon 3
GGAATCCTTGGACAACAAGGGAAGACTAATGGTGGAAAAGGATTTAAGAATAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCTgtaagtctactttaaacttgcacattctgtta---ttcgatctacttgcagatgttccattattccctctgtttgagaatgttctgtacaa-ctgagagttctt
| |   ||||||     | |||||  | | ||| ||  |  | |||||| | || ||  |  | ||||||||||||||||| || || ||||||||||| ||||||   ||||  | | | |  || | ||    ||  |  |   |  |  | ||     | |  |  | ||| | ||    ||  | ||  ||  |  ||  
GAATGACTTGGATGGTCAAGGAAGGATCAAGGTAGATGAAAAATTAAGAGTCAAGGGCAAGGACAACATTTTTGCAATTGGAGATATTACAGATATTCCAgtaagt--gcttttcattagtaacttttattcagctttcacatttatataattttttttgcagttaccttcttttataacaaactcaataagttgccaagtc--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14981945|gb|BI306623.1|BI306623
EST:     TAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCT                         GAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
genomic: TAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCTgtaagtctac ... aatttttcagGAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
EST: gi|88220712|gb|CI220272.1|CI220272
EST:     TAAAAGGTGATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCT                         GAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
genomic: TAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCTgtaagtctac ... aatttttcagGAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
EST: gi|88834025|gb|CI077506.1|CI077506
EST:     TAAAAGGTTATAATAACATTTTGGCAATTGGTGACATCACAGATATTCCT                         GAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
genomic: TAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCTgtaagtctac ... aatttttcagGAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
EST: gi|88251913|gb|CI349150.1|CI349150
EST:     GGTGACATCACAGATATTCCT                         GAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
genomic: GGTGACATCACAGATATTCCTgtaagtctac ... aatttttcagGAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
EST: gi|89175486|gb|CI042507.1|CI042507
EST:     TAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCT                         GAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
genomic: TAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCTgtaagtctac ... aatttttcagGAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
EST: gi|88833282|gb|CI076765.1|CI076765
EST:     TAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATACTCCT                         GAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
genomic: TAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCTgtaagtctac ... aatttttcagGAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG
EST: gi|86414900|gb|CI069303.1|CI069303
EST:     TAAAAGGTTATAATAACATTTGTGCAATTGGTGACATCACAGATATTCCT                         GAAATTAAGCAAGGTTACCTNGCCCATAAGCATGCTCTGCTAGTAGCAAAG
genomic: TAAAAGGTTATAATAACATTTTTGCAATTGGTGACATCACAGATATTCCTgtaagtctac ... aatttttcagGAAATTAAGCAAGGTTACCTTGCCCATAAGCATGCTCTGCTAGTAGCAAAG