1 5' 3' | 2 5' 3' | 3 5' 3' |
CGGCGTCGCGACGATGCTGCCGCTGCTGGTCGCCTGCGTCGCCGACGCCTGGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTGgtcagttcccactttcccccttttcactgacagaaaaaagcgcacgcctttcttcagatgaacttttccaaatcacctacatatatccaatttgggggcg...
species | Oryza sativa |
transcript | LOC_Os01g65100.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGACEST: gi|29681953|gb|CB678228.1|CB678228
genomic: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTGgtcagttccc ... gctgctgcagAGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGAC
EST: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGACEST: gi|29617558|gb|CB622570.1|CB622570
genomic: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTGgtcagttccc ... gctgctgcagAGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGAC
EST: GGCTCGGCCGCTACCGCACCATCGTGCTCGCTTCCCTCCTCTTCGTCGTG AGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGACEST: gi|12623245|gb|AU173458.1|AU173458
genomic: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTGgtcagttccc ... gctgctgcagAGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGAC
EST: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGACEST: gi|58587513|gb|CF985821.1|CF985821
genomic: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTGgtcagttccc ... gctgctgcagAGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGAC
EST: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGACEST: gi|58691668|gb|CK080355.1|CK080355
genomic: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTGgtcagttccc ... gctgctgcagAGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGAC
EST: GGCTCGGCCGCTACCGCACCATCGTGCTCGCTTCCCTCCTCTTCGTCGTG AGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGACEST: gi|29677445|gb|CB673720.1|CB673720
genomic: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTGgtcagttccc ... gctgctgcagAGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGAC
EST: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGACEST: gi|29660045|gb|CB656320.1|CB656320
genomic: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTGgtcagttccc ... gctgctgcagAGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGAC
EST: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGACEST: gi|29674560|gb|CB670835.1|CB670835
genomic: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTGgtcagttccc ... gctgctgcagAGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGAC
EST: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGAC
genomic: GGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTGgtcagttccc ... gctgctgcagAGCATGGGGATGTTAACCCTCTCGTCGGCGCTCCCGGCGTTCCACGGCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGTCGCGACGATGCTGCCGCTGCTGGTCGCCTGCGTCGCCGACGCCTGGCTCGGCCGCTACCGCACCATCGTGCTCGCCTCCCTCCTCTTCGTCGTGgtcagttcccactttcccccttttcactgacagaaaaaagcgcacgcctttcttcagatgaacttttccaaatcacctacatatatccaatttgggggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa