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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACGTTCGCGGCCTCCAGGTACGCCGCCGTGACGGCCACTGGGTCACCGTGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAGgtacacatatatgtaggacttatataattaattaatcaaagagcaataatcactatcgtggcttttccatgacctgggattaagaattactcatgattaa...

Basic information

species Oryza sativa
transcript LOC_Os01g61610.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g61610.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G058024_T02 (Zea mays), 5'ss of exon 3
CCACGTTCGCGGCCTCCAGGTACGCCGC--CGT-GACGGCCACTGGGTCACCGTGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAGgtacacatatatgtaggacttatataattaattaatcaaagagcaataatcactatcgtggcttttccatgacctgggattaagaattactcatgattaa-
   ||| |||||||| ||||| ||||||  ||  | || | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||  |  ||||| |  |||||       | |    |  |||||||   |  || |  || |  | |   ||| |   |   ||    ||||| |  |   |||    || 
---CGTCCGCGGCCTGCAGGTCCGCCGCGCCGCCGCCGACGACTGGGTCACCGTGCAGCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAGgtatat-tatattatattataaccacaccaattaataccatcgcgaggatgatgacccgcgctatcagagagccaataattaaaagctcaacatatagaag

upper sequence: LOC_Os01g61610.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G122280_T02 (Zea mays), 5'ss of exon 3
CCACGTTCGCGGCCTCCAGGTACGCCGCCGTGACGGCCACTGGGTCACCGTGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAGgtacacata-tatgtaggacttatataattaattaatcaaagagca-ataatcactatcgtggcttttccatgacctgggattaagaattactcatgattaa
 ||||| |||||||| ||||| |||||  | | |||| ||||||||  |||||  ||| ||| ||||||||||||||||||||||||||||||  |  ||||| | |||  |   |  |    |  |  ||||||| | | |   | ||  |    ||  ||||| |  | |  |||    |  |  ||  ||   |     
GCACGTCCGCGGCCTGCAGGTCCGCCGTAGCGCCGGCGACTGGGTCGACGTGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAGgta-atatagcaaccaacatcgttccagctaattaagctaggtatacatcttgtgcatgttggctgtatcgtc-cctactctctactatagctagcgtgccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58692632|gb|CK081319.1|CK081319
EST:     TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAG                         ATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
genomic: TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAGgtacacatat ... cgacgtacagATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
EST: gi|58689249|gb|CK077936.1|CK077936
EST:     TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAG                         ATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
genomic: TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAGgtacacatat ... cgacgtacagATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
EST: gi|88220933|gb|CI218784.1|CI218784
EST:     CGTCAACGTCGGCGACCAGATTGAG                         ATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
genomic: CGTCAACGTCGGCGACCAGATTGAGgtacacatat ... cgacgtacagATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
EST: gi|58687312|gb|CK075999.1|CK075999
EST:     TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAG                         ATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
genomic: TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAGgtacacatat ... cgacgtacagATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC