1 5' 3' | 2 5' 3' | 3 5' 3' |
AATTTTGGACTTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGgtgagaatgggggtgataattgattaatcagtaaaggcatatctttttcttgtttttgtttagattctctgtatggtgttgcttttattatgttttaata...
species | Oryza sativa |
transcript | LOC_Os01g41010.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAG TGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCCEST: gi|58598807|gb|CK009335.1|CK009335
genomic: C-T-TTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGgtgagaatgg ... aaatctgcagTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCC
EST: CTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAG TGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCC
genomic: C-T-TTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGgtgagaatgg ... aaatctgcagTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTTGGACTTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGgtgagaatgggggtgataattgattaatcagtaaaggcatatctttttcttgtttttgtttagattctctgtatggtgttgcttttattatgttttaata
- - - - - - - - - GGAGCT
- - - - - - - - - - AGCTGC
- - - - - - - - - - - GCTGCT
- - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggggtg