Sequence
atgc intronic sequence ATGC exonic sequenceGAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATGTTCAAGACGCCCATCACCTgtaagtatgcaaccaaccaattaatctgcatttcactacaatttcgaagggttagaagattgtataaaacatgagaaagagagaattagtttagtaaata...
Basic information
species | Oryza sativa |
transcript | LOC_Os01g18360.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g18360.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G074742_T01 (Zea mays), 5'ss of exon 2
GAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATGTTCAAGACGCCCATCACCTgtaagtatgcaaccaaccaattaatctgcatttcactacaatt--tcgaagggttagaagattgtataaaacatgagaaagagagaattagttta-gtaaata
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GAAGGCGTCCCGATCGGCCGGAAGCTGGACATGCTCTTGCTGGACGGGTACAGCAGCCTCCTAGCGAAACTTTGCCACATGTTCAAGGCATCTATCACTTgtaagtatatatgcaactagccaataagctcatcattaccacagattttttaatcagaggaa-gcaaaaaaaaaaaaaagatggtaatcattccatgccaa--
upper sequence: LOC_Os01g18360.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G853479_T01 (Zea mays), 5'ss of exon 1
GAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATGTTCAAGACGCCCATCACCTgtaagtatgca---accaaccaattaatctgcat-ttcactac-aatttcgaagggttagaa--gattg--tataaaacatgagaaagagagaattagtttagtaaata----------------------------
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GAAGGCGTTGCGATCGGCCGGAAGCTGGACTTGCTCTTGCTGGATGGGTACGACAGCCTCCTAGCGAAGCTCCGCCACATGTTCAAGGCCTCCATCACCTgtaagtatatatgcatcgtctagctagctaatacgttcattattaattaccacagatttgaattgtttgatttttaaacccaaggcaatggtatcacatcttgcctgccatgtcataatattgtattgtatgattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89185778|gb|CI047647.1|CI047647EST: TGACAGCCTCCTCATCAAGCTCTGCCACATGTTCAAGACGCCCATCACCT ATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAGAAGGCTGCCC
genomic: TGACAGCCTCCTCATCAAGCTCTGCCACATGTTCAAGACGCCCATCACCTgtaagtatgc ... atatgattagATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAGAAGGCTGCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATGTTCAAGACGCCCATCACCTgtaagtatgcaaccaaccaattaatctgcatttcactacaatttcgaagggttagaagattgtataaaacatgagaaagagagaattagtttagtaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT