1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAGAGTTCAACAAACTCAAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctctattgaattatattcaatttgagtaaatgatttactttgctcattttaccaatgagatgttcacataggctttctggacttagttcagtt...
species | Oryza sativa |
transcript | LOC_Os01g06270.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAGCACTCTCTGAAGTCCGAEST: gi|88593663|gb|CI713617.1|CI713617
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAAGCACTCTCTGAAGTCCGA
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAGCACTCTCTGAAGTTCGATTCTGCTEST: gi|88675253|gb|CI727368.1|CI727368
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAAGCACTCTCTGAAGTCCGATTCTGCT
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAGCACTCTCTGAAGTCCGATTCTGCTCTAGAATGGAAGAGEST: gi|88972621|gb|CI717347.1|CI717347
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAAGCACTCTCTGAAGTCCGATTCTGCTCTAGAATGGAAGAG
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAEST: gi|88670454|gb|CI724570.1|CI724570
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAA
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAGCACTCTCTGAAGTCCGATTCTGCTCTAGAATGGAAGAGEST: gi|88595334|gb|CI714155.1|CI714155
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAAGCACTCTCTGAAGTCCGATTCTGCTCTAGAATGGAAGAG
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAGCACTCTCTGAAGTCCGATTCTGCEST: gi|88670097|gb|CI724213.1|CI724213
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAAGCACTCTCTGAAGTCCGATTCTGC
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAGCACTCCTCTGAAGTCCGATTCTGCTCTAGAATGGAAGAEST: gi|88669723|gb|CI723839.1|CI723839
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAAGCACTC-TCTGAAGTCCGATTCTGCTCTAGAATGGAAGA
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAGCACTCTCTGAAEST: gi|88687953|gb|CI731529.1|CI731529
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAAGCACTCTCTGAA
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAGCACTCTCTGAAGTCCGATTCEST: gi|88905475|gb|CI712774.1|CI712774
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAAGCACTCTCTGAAGTCCGATTC
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAGCACTCTCEST: gi|88593918|gb|CI713872.1|CI713872
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAAGCACTCTC
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAGCACEST: gi|87017026|gb|CI286162.1|CI286162
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAAGCAC
EST: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAG TCATTCAAAGAAGCACTCTCTGAAGTCCGATTCTGCTCTAGAATGGAAGAG
genomic: AAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctc ... ctttgaccagTCATTCAAAGAAGCACTCTCTGAAGTCCGATTCTGCTCTAGAATGGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAGAGTTCAACAAACTCAAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctctattgaattatattcaatttgagtaaatgatttactttgctcattttaccaatgagatgttcacataggctttctggacttagttcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG