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AGCAACAACTAGCGGAGACAAAAAAGAAGTGTGCTCAGCTTGCTGATGACCTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttagctacttataacatcttattttatcaatgtgccgagtttctaatttttctttactctggtagttctctaatctcgcaaatatctgtactct...
species | Oryza sativa |
transcript | LOC_Os10g10190.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: CTGCGTATAAGGAAGAGCCAGCAGCAGCANCAGCCCCCTTACATATAAAG GTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGAEST: gi|29625116|gb|CB630127.1|CB630127
genomic: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttag ... tctcttccagGTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
EST: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAG GTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGAEST: gi|29626847|gb|CB631858.1|CB631858
genomic: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttag ... tctcttccagGTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
EST: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAG GTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGAEST: gi|88536202|gb|CI465934.1|CI465934
genomic: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttag ... tctcttccagGTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
EST: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAG GTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGAEST: gi|88846396|gb|CI373164.1|CI373164
genomic: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttag ... tctcttccagGTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
EST: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAG GTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGAEST: gi|58695133|gb|CK083820.1|CK083820
genomic: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttag ... tctcttccagGTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
EST: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAG GTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGAEST: gi|88545024|gb|CI474553.1|CI474553
genomic: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttag ... tctcttccagGTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
EST: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAG GTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGAEST: gi|88839392|gb|CI000864.1|CI000864
genomic: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttag ... tctcttccagGTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
EST: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAG GTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGAEST: gi|88536596|gb|CI466364.1|CI466364
genomic: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttag ... tctcttccagGTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
EST: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAG GTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGAEST: gi|25803284|gb|CA759245.1|CA759245
genomic: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttag ... tctcttccagGTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
EST: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAG GTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGAEST: gi|86841579|gb|CI336521.1|CI336521
genomic: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttag ... tctcttccagGTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
EST: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAG GTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
genomic: CTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttag ... tctcttccagGTTAATTTATCGGTGGACCACAGAGGTGCTAACAAACGACCAAAGGTGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAACAACTAGCGGAGACAAAAAAGAAGTGTGCTCAGCTTGCTGATGACCTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGgttagtttagctacttataacatcttattttatcaatgtgccgagtttctaatttttctttactctggtagttctctaatctcgcaaatatctgtactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA