1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
AAAACGAAGAAGGTCACAAGAATTTCTCCCCCCAACATTTGTCTCAGAACCTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatgatccttgtgttttctttatgcttattgttggagtaattgttttaatttcaacttgatatgcattatcataagacccaggtgtagccttttt...
species | Oryza sativa |
transcript | LOC_Os04g23890.4 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|88306572|gb|CI671324.1|CI671324
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGEST: gi|88578420|gb|CI687351.1|CI687351
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGG
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|113931112|gb|DQ883893.1|DQ883893
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTEST: gi|88580457|gb|CI697388.1|CI697388
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCT
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGEST: gi|33381050|gb|CF196393.1|CF196393
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTG
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACGAAGAAGGTCACAAGAATTTCTCCCCCCAACATTTGTCTCAGAACCTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatgatccttgtgttttctttatgcttattgttggagtaattgttttaatttcaacttgatatgcattatcataagacccaggtgtagccttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA