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21 5' 3' | 22 5' 3' |
AAAACGAAGAAGGTCACAAGAATTTCTCCCCCCAACATTTGTCTCAGAACCTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatgatccttgtgttttctttatgcttattgttggagtaattgttttaatttcaacttgatatgcattatcataagacccaggtgtagccttttt...
species | Oryza sativa |
transcript | LOC_Os04g23890.2 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29618297|gb|CB623309.1|CB623309
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29619193|gb|CB624205.1|CB624205
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: TCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29679663|gb|CB675938.1|CB675938
genomic: TCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29680790|gb|CB677065.1|CB677065
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: ATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29626656|gb|CB631667.1|CB631667
genomic: ATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29615866|gb|CB620878.1|CB620878
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|33799059|gb|CF325389.1|CF325389
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29685421|gb|CB681696.1|CB681696
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29612811|gb|CB617824.1|CB617824
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29630592|gb|CB635601.1|CB635601
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29620201|gb|CB625213.1|CB625213
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|88306572|gb|CI671324.1|CI671324
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGEST: gi|29619194|gb|CB624206.1|CB624206
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGG
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|88578420|gb|CI687351.1|CI687351
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29613428|gb|CB618441.1|CB618441
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|86481914|gb|CI124547.1|CI124547
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29618974|gb|CB623986.1|CB623986
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|29646470|gb|CB651477.1|CB651477
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: ACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCEST: gi|113931112|gb|DQ883893.1|DQ883893
genomic: ACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTEST: gi|88580457|gb|CI697388.1|CI697388
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCT
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGEST: gi|33381050|gb|CF196393.1|CF196393
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTG
EST: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCA GAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
genomic: CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatga ... atcgttttagGAGGTTATAACGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACGAAGAAGGTCACAAGAATTTCTCCCCCCAACATTTGTCTCAGAACCTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAgtaagaatgatccttgtgttttctttatgcttattgttggagtaattgttttaatttcaacttgatatgcattatcataagacccaggtgtagccttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA