1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GTTTAGTGAAAGAGGATCACTTGCTGGTAAGCAGCTCCCGCGAAGACCAGTTACCTCACAGAAATTGGAAGCTGGAGAAAAGAAGACGAAGGATAAGAAGgtttgtacttctgttttcaggttttttacttcttttctgtaccttgctaatgtgtagaccacatggtttttcag
species | Oryza sativa |
transcript | LOC_Os02g52960.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CTGGAGAAAAGAAGACGAAGGATAAGAAG AATAGGGAAACATTTCAAAAGGAGCTGTTTATGACATCTGATCAAGCTTCTEST: gi|29643344|gb|CB648351.1|CB648351
genomic: CTGGAGAAAAGAAGACGAAGGATAAGAAGgtttgtactt ... ggtttttcagAATAGGGAAACATTTCAAAAGGAGCTTTTTATGACATCTGATCAAGCTTCT
EST: TTACCTCACAGAAATTGGAAGCTGGAGAAAAGAAGACGAAGGATAAGAAG AATAGGGAAACATTTCAAAAGGAGCTTTTTATGACATCTGATCAAGCTTCTEST: gi|86431557|gb|CI085168.1|CI085168
genomic: TTACCTCACAGAAATTGGAAGCTGGAGAAAAGAAGACGAAGGATAAGAAGgtttgtactt ... ggtttttcagAATAGGGAAACATTTCAAAAGGAGCTTTTTATGACATCTGATCAAGCTTCT
EST: TTACCTCACAGAAATTGGAAGCTGGAGAAAAGAAGACGAAGGATAAGAAG AATAGGGAAACATTTCAAAAGGAGCTTTTTATGACATCTGATCAAGCTTCTEST: gi|58666060|gb|CK054746.1|CK054746
genomic: TTACCTCACAGAAATTGGAAGCTGGAGAAAAGAAGACGAAGGATAAGAAGgtttgtactt ... ggtttttcagAATAGGGAAACATTTCAAAAGGAGCTTTTTATGACATCTGATCAAGCTTCT
EST: TTACCTCACAGAAATTGGAAGCTGGAGAAAAGAAGACGAAGGATAAGAAG AATAGGGAAACATTTCACAAGGAGCTTTTTATGACATCTGATCAAGCTTCT
genomic: TTACCTCACAGAAATTGGAAGCTGGAGAAAAGAAGACGAAGGATAAGAAGgtttgtactt ... ggtttttcagAATAGGGAAACATTTCAAAAGGAGCTTTTTATGACATCTGATCAAGCTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTAGTGAAAGAGGATCACTTGCTGGTAAGCAGCTCCCGCGAAGACCAGTTACCTCACAGAAATTGGAAGCTGGAGAAAAGAAGACGAAGGATAAGAAGgtttgtacttctgttttcaggttttttacttcttttctgtaccttgctaatgtgtagaccacatggtttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG