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CATGCGTCCGGAAAGAAGCTTCAAGAGGTCCTAGAAGAGGCCATTGTTCATCCTCTTCACATTAACGGGGAGCTATATATTGGCATTCCTCCAGgtataactaacaaaacttcccagtttagctttcaacaaaataggtgtacgcattgatataatgatggatattttttttttctacaaatccataaacatat...
species | Oryza sativa |
transcript | LOC_Os06g48770.2 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: TGTTCATCCTCTTCACATTAACGGGGAGCTATATATTGGCATTCCTCCAG GTGTCGAATCTCGCCTTGCGGCACTGACAGTCGACATGGAGGAGCTCGAGAEST: gi|58605848|gb|CK033881.1|CK033881
genomic: TGTTCATCCTCTTCACATTAACGGGGAGCTATATATTGGCATTCCTCCAGgtataactaa ... cccttgtcagGTGTCGAATCTCGCCTTGCGGCACTGACAGTCGACATGGAGGAGCTCGAGA
EST: TGTTCATCCTCTTCACATTAAGGGGGAGCTATATATTGGCATTCCTCCAG GTGTCGAATCTCGCCTTGCGGCACTGACAGTCGACATGGAGGAG
genomic: TGTTCATCCTCTTCACATTAACGGGGAGCTATATATTGGCATTCCTCCAGgtataactaa ... cccttgtcagGTGTCGAATCTCGCCTTGCGGCACTGACAGTCGACATGGAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCGTCCGGAAAGAAGCTTCAAGAGGTCCTAGAAGAGGCCATTGTTCATCCTCTTCACATTAACGGGGAGCTATATATTGGCATTCCTCCAGgtataactaacaaaacttcccagtttagctttcaacaaaataggtgtacgcattgatataatgatggatattttttttttctacaaatccataaacatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT