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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGACAGgtcagttgccgtaccagttggctattcatggtgtcatttgagttatgttttattcatgctggttgagtcaatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g13050.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g13050.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G110289_T01 (Zea mays), 5'ss of exon 16
TGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGACAGgtcagttg---ccgtaccagttggct------attcatggtgtcat-ttgagttatgtttta-ttcatg-ctggtt--gagtcaat-gcag
 || |||||||| ||||||||||| || || || ||||| || ||||| || ||||| ||||||||||| ||||||||||||||||| ||||| |||||||| || |     |||      ||  |      || ||||  | ||| || | ||   ||  | | |||| ||  ||  ||| || | ||||
CGACGGAGCATTCGCATTGGCACAGGCGCTCAAGGCTAACGAGGATCTGGCGGTCACGTCATTAAATCTCGCAAACAACTTCTTCACGAAATTCGGACAGgttagatcagttcgtttttagtgtatcgatggatgcatgaaggcatgtttaattgaattccaatccatgtcttattctgagccacttgcag

upper sequence: LOC_Os06g13050.1 (Oryza sativa), 5'ss of exon 17
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 5'ss of exon 16
TGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGACAGgtcagttgccgtaccagttggctattcatggt-gtcatttg---agttatgttttattcatgctggttgagtcaatgcag
||| || ||||||||  | || |||||||| || |||||||||||| | |||||||| ||  |||| ||||| | ||||||| |||| ||||||||||| || | || |  | |   || | | ||| || | ||  | |    || ||| | | |   |   |   |   || ||||||
TGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGACAAgtaaattccttttctgttttgtttttcctgtttgtagtgtatatagctatatataacaaactttaact---tccatgcag