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AGATGTGGTTGCTGCTGCTGATACACTGTCTGCAGAAGATGTTCTTGGTCGTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgcctaaactttggaaattatactctttttacttaacatgctacattctgcaactgtcacatcattttccttaaccatcttgtgatgtag
species | Oryza sativa |
transcript | LOC_Os01g42850.2 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGAT TCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGAEST: gi|29672225|gb|CB668500.1|CB668500
genomic: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgc ... tgtgatgtagTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGA
EST: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGAT TCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGAEST: gi|29667791|gb|CB664066.1|CB664066
genomic: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgc ... tgtgatgtagTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGA
EST: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGAT TCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGAEST: gi|29641126|gb|CB646133.1|CB646133
genomic: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgc ... tgtgatgtagTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGA
EST: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGAT TCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGAEST: gi|33682080|gb|CF310319.1|CF310319
genomic: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgc ... tgtgatgtagTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGA
EST: TCAGA-ACTNANGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGAT TCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCCTGGEST: gi|29674598|gb|CB670873.1|CB670873
genomic: TCAGAGACT-AGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgc ... tgtgatgtagTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCC-TGG
EST: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGAT TCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGAEST: gi|29640245|gb|CB645254.1|CB645254
genomic: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgc ... tgtgatgtagTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGA
EST: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGAT TCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGAEST: gi|29627979|gb|CB632990.1|CB632990
genomic: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgc ... tgtgatgtagTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGA
EST: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGAT TCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGAEST: gi|29629460|gb|CB634469.1|CB634469
genomic: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgc ... tgtgatgtagTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGA
EST: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGAT TCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGAEST: gi|29674600|gb|CB670875.1|CB670875
genomic: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgc ... tgtgatgtagTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGA
EST: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGAT TCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGAEST: gi|29642677|gb|CB647684.1|CB647684
genomic: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgc ... tgtgatgtagTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGA
EST: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGAT TCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGA
genomic: GTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgc ... tgtgatgtagTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGTGGTTGCTGCTGCTGATACACTGTCTGCAGAAGATGTTCTTGGTCGTCAGAGACTAGGATGTTATTTCTGCAATGACGTCGTTGCTCCTGTTGATgtaatgttgcctaaactttggaaattatactctttttacttaacatgctacattctgcaactgtcacatcattttccttaaccatcttgtgatgtag
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