1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGACCAAGCTGCCTTCATCTTGAGCATACCAAAGAGGAAGCCAATGGACGAGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacatcttcagctctcccaacctcacaatgccatacaaaatcttatgatgcgtcgaactttttttgacggaaatgatgcgtcgaactaacattgctgttaaaatctcag
species | Oryza sativa |
transcript | LOC_Os03g57940.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAG GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACCEST: gi|87024580|gb|CI259295.1|CI259295
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAG GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACCEST: gi|88271635|gb|CI387688.1|CI387688
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAG GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACCEST: gi|89178781|gb|CI391779.1|CI391779
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAG GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACCEST: gi|88273426|gb|CI393832.1|CI393832
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAG GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACCEST: gi|88455876|gb|CI526692.1|CI526692
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAG GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACCEST: gi|87021813|gb|CI277980.1|CI277980
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAG GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACCEST: gi|29616080|gb|CB621092.1|CB621092
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAG GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACCEST: gi|58685128|gb|CK073815.1|CK073815
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCA-G GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCEST: gi|88269536|gb|CI380834.1|CI380834
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCC
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAG GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACCEST: gi|86412466|gb|CI017334.1|CI017334
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAG GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACCEST: gi|25801459|gb|CA757420.1|CA757420
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
EST: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAG GAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
genomic: AGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacat ... aaaatctcagGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACCAAGCTGCCTTCATCTTGAGCATACCAAAGAGGAAGCCAATGGACGAGACACAAGAAACTCTTCGAACTTCCTCCTTTCCCAGCAACCATGTCAAGgtacatacatcttcagctctcccaacctcacaatgccatacaaaatcttatgatgcgtcgaactttttttgacggaaatgatgcgtcgaactaacattgctgttaaaatctcag
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