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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtatgtgcgcatgcctttagctcctgaaagtcacattatgcctgaaattcttgtttgatttcgatttgtgacatacataggatataacatttcaatgcttatatatatggacag

Basic information

species Oryza sativa
transcript LOC_Os07g47290.3
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G313536_T01 (Zea mays), 5'ss of exon 12
CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtatgtgcgcatgcctt---tagctcctgaaagtcacattatgcctgaaattc----ttgtttgatttcgatttgtgacatacataggatataacatttcaatgcttatatatatggacag-------------------------------------------
|||||| |||||  | ||||||||| | |||||||| |||||||| ||||| ||||| |||||||||||||| ||  | ||||||||    ||   |   || |||||     |   | || || |   |  |    || ||||  ||  | | |  ||||||||    |     |||    |    | | | |     |                                            
CTGCCATCATGAATTGGAGACTGCACGGATTAATGGGCTGCTTGGAAATATCGATGCAAACACTGGTGATCCTCAAGTTGgtatgtgtcactgttgtatataactcctttgttttttaataagcgtatgacccgatattatttgtgttacactagaaacatacatgcatttctttattcttttctagagagagaaaattaaaaaatgaggcatgcatagtaacttaccttaccgttatggacag

upper sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G427620_T01 (Zea mays), 5'ss of exon 8
CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtatgtgcgcatgcctt---tagctcctgaaagtcacattatgcctgaaattc----ttgtttgatttcgatttgtgacatacataggatataacatttcaatgcttatatatatggacag-----------------------------------------
|||||| |||||  | ||||||||| | |||||||| |||||||| ||||| ||||| |||||||||||||| ||  | ||||||||    ||   |   || |||||     |   | || || |   |  |    || ||||  ||  | | |  ||||||||    |     |||    |    | | | |   | |                                          
CTGCCATCATGAATTGGAGACTGCACGGATTAATGGGCTGCTTGGAAATATCGATGCAAACACTGGTGATCCTCAAGTTGgtatgtgtcactgttgtatataactcctttgttttttaataagcgtatgacccgatattatttgtgttacactagaaacatacatgcatttctttattcttttctagagagaaaattaaaaaatgaggcatgcatagtaacttaccttaccgttatggtcag

upper sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G081682_T01 (Zea mays), 5'ss of exon 15
CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtatgtgcgcatgcctt---tagctcctgaaagtcacattatgcctgaaattc----ttgtttgatttcgatttgtgacatacataggatataacatttcaatgcttatatatatggacag---------------------------------------------
|||||| |||||  | ||||||||| | |||||||| |||||||| ||||| ||||| |||||||||||||| ||  | ||||||||    ||   |   || |||||     |   | || || |   |  |    || ||||  ||  | | |  ||||||||    |     |||    |    | | | |   | |                                              
CTGCCATCATGAATTGGAGACTGCACGGATTAATGGGCTGCTTGGAAATATCGATGCAAACACTGGTGATCCTCAAGTTGgtatgtgtcactgttgtatataactcctttgttttttaataagcgtatgacccgatattatttgtgttacactagaaacatacatgcatttctttattcttttctagagagaaaaaaataaaaaaaatgaggcatgcatagtaacttaccttaccgttatggacag

upper sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G005493_T01 (Zea mays), 5'ss of exon 15
CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtatgtgcgcatgcctt--tagctcctg-----aaagtcacattatgcctgaaattcttgtttgatttc-------gatttgtgacatacataggatataacattt-caatg-cttatata-----tatggacag
|||||| ||||| || ||||||||| | |||||||| ||||||||||| |||||||| |||||||||||||| ||  | |||| |||    ||  |   || ||| |      | | |   |  || | || |  ||||  ||   ||         |     |  ||| | || ||    |||    | |  ||||| |      ||||  |||
CTGCCATCATGAACTGGAGACTGCACGCATTAATGGGCTGCTTGGGAACATTGATGCAAACACTGGTGATCCTCAAGTTGgtaagtgtcactgtttacataactcattgtgttatactggaagcatacatgcatctctttcttctctttttagagaaagaaaagtaataaaaagaatgaggcatgcatagtaacttatcttccccttatgagcag

upper sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G544990_T01 (Zea mays), 5'ss of exon 13
CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtatgtgcgcatgcctt---tagctcctgaaagtcacattatgcctgaaattc----ttgtttgatttcgatttgtgacatacataggatataacatttcaatgcttatatatatggacag
|||||| |||||  | ||||||||| | |||||||| |||||||| ||||| ||||| |||||||||||||| ||  | ||||||||    ||   |   || |||||     |   | || || |   |  |    || ||||  ||  | | |  ||||||||    |     |||                       
CTGCCATCATGAATTGGAGACTGCACGGATTAATGGGCTGCTTGGAAATATCGATGCAAACACTGGTGATCCTCAAGTTGgtatgtgtcactgttgtatataactcctttgttttttaataagcgtatgacccgatattatttgtgttacactagaaacatacatgcatttctttattct---------------------

upper sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G080345_T01 (Zea mays), 5'ss of exon 1
----------------------CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtatgtgcgcatgcctt---tagctcctgaaagtcacattatgcctgaaattc----ttgtttgatttcgatttgtgacatacataggatataacatttcaatgcttatatatatggacag------------------------------------------------
                      |||||| |||||  | |||||  ||   |||||||| |||||||| ||||| ||||| |||||||||||||| ||  | ||||||||    ||   |   || |||||     |   | || |  |   |  |    || ||||  ||  | | |  ||||||||    |     |||    |    | | | |   | |                                                 
GAACTACATGTTAAACTTGCAGCTGCCATCATGAATTGGAGACCACA--GATTAATGGGCTGCTTGGAAATATCGATGCAAACACTGGTGATCCTCAAGTTGgtatgtgtcactgttgtatataactcctttgctttttaataagtgtatgacccgatattatttgtgttacactagaaacatacatgcatttctttattcttttatagagaaagaaaaaaataaaaaaaaatgaggcatgcatagtaacttaccttaccgttatggaaag

upper sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA17G07380.1 (Glycine max), 5'ss of exon 15
CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtatgtgcgcatgcctttagctcctgaaagtcacattatgcctgaaattcttgtttgatttcgatttgtgacatac-ataggatataacatttcaatgcttatatatatggacag---
 || || |||||||| || |||||||| || |||||  |||| || ||||||||||| |||||||||||||| ||  | |||||||  | || |  | |  |  | ||  |||  | |    | | ||       |||  |      || |||||| | | ||    |  ||  |||    |  | |    || |   
TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatgaattctctcatttaataaa--tcatgtaaattttaacatagaaacatgaactgag---gtaacataccacaagaatggaagttgtaatatgaagctgttattactgcag

upper sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 15
lower sequence: AT5G57655.1 (Arabidopsis thaliana), 5'ss of exon 7
--------------------CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtatgtgcgcatgcctttagctcctgaaagt---cacattatgcctgaaattcttgtttgatttcgatttgtgacatacataggatataacatttcaatgcttatatatatggacag
                     || || || |||||||| |||||||||||||||||| | ||||| || |||||||| |||||||| ||| | || |  ||||  |   ||         ||| |||  ||   ||| |  |  |  | |||||  ||  |    | | | | |    | ||  |                                
GCCACGCTCTCTGGTCACACTTGTCATCACGAGCTTGAAACTGCAAGAATTAATGGTTTACTTGGCAACATTGATGCAAACACTGGCGATGCTCAAACTGgtaatttttcaatttcagctctcttgattgttaacacctcctaacc-agattctgattgaacaaagttctctcattctcttaacag-------------------------------

upper sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 15
lower sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 16
CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtat----gtgcgcatgcctttagctcctgaaagtcacattatgcct--gaaattctt---gtttgatttcgatttgtgacatac-----ataggat-ataacatttcaatgcttatatatatggacag
||| || ||||||||||||||||||||| | |||||| | || || ||||||||||| |||||||| || || || || |||||    ||   |||    |    | ||  || |   | | | | |  |  ||| |    | ||||  |  ||| || | || |     ||  |||  |||| | |   || |  |  ||     |||
CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgtctacataaactgcttttctagaatttttacttttcttttgccattttacaggcttgacataaattagt-atattctgattatgagattgtaacctatagctgttgtttcatgaatgcag