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CCTATTGGCGCAGCCCAGATTACAATCTTGTTAGATTTTCCTTCACTCTGTTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGATCGGCACCAAGATgtaaatacttcctctctttttcatctttgactccttaatcttaatgttccagtatctgacgtttttggtgtcttatgatcag
species | Oryza sativa |
transcript | LOC_Os06g36090.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGATCGGCACCAAGAT GGGAAATGCCAATTCTCTTAGAATGGTCATTGGAGCAATGTATACAGCAGTEST: gi|25797192|gb|CA753153.1|CA753153
genomic: TTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGATCGGCACCAAGATgtaaatactt ... ttatgatcagGGGAAATGCCAATTCTCTTAGAATGGTCATTGGAGCAATGTATACAGCAGT
EST: TTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGATCGGCACCAAGAT GGGAAATGCCAATTCTCTTAGAATGGTCATTGGAGCAATGTATACAGCAGTEST: gi|38470736|gb|CF954867.1|CF954867
genomic: TTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGATCGGCACCAAGATgtaaatactt ... ttatgatcagGGGAAATGCCAATTCTCTTAGAATGGTCATTGGAGCAATGTATACAGCAGT
EST: TTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGATCGGCACCAAGAT GGGAAATGCCAATTCTCTTAGAATGGTCATTGGAGCAATGTATACAGCAGTEST: gi|33682388|gb|CF310627.1|CF310627
genomic: TTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGATCGGCACCAAGATgtaaatactt ... ttatgatcagGGGAAATGCCAATTCTCTTAGAATGGTCATTGGAGCAATGTATACAGCAGT
EST: TTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGATCGGCACCAAGAT GGGAAATGCCAATTCTCTTAGAATGGTCATTGGAGCAATGTACACAGCAGT
genomic: TTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGATCGGCACCAAGATgtaaatactt ... ttatgatcagGGGAAATGCCAATTCTCTTAGAATGGTCATTGGAGCAATGTATACAGCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTATTGGCGCAGCCCAGATTACAATCTTGTTAGATTTTCCTTCACTCTGTTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGATCGGCACCAAGATgtaaatacttcctctctttttcatctttgactccttaatcttaatgttccagtatctgacgtttttggtgtcttatgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA