1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AACGGCACGTGGAGCCACAAGTTACAACTGATGAGTATGAGCGGGGATCTTATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaataacatcattgcatgcatattagaatctattttctggcatggtattgctgtttccaatcgagttctctattagctgggctcagtatggcagtagtaatactaatttctaagatggtacccttcttcgactgtgtttaacttgcttataccgttgcttgcag
species | Oryza sativa |
transcript | LOC_Os03g44900.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88534629|gb|CI463367.1|CI463367
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|89195186|gb|CI051299.1|CI051299
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|89178711|gb|CI391709.1|CI391709
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|86522596|gb|CI162802.1|CI162802
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88524715|gb|CI453658.1|CI453658
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88291966|gb|CI532558.1|CI532558
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88663925|gb|CI488387.1|CI488387
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|29630459|gb|CB635468.1|CB635468
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88552635|gb|CI482662.1|CI482662
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88549386|gb|CI479272.1|CI479272
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88663021|gb|CI477176.1|CI477176
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|8527420|gb|AU092235.1|AU092235
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88662788|gb|CI474166.1|CI474166
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88268296|gb|CI378231.1|CI378231
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88289106|gb|CI520436.1|CI520436
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88469340|gb|CI406611.1|CI406611
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88275469|gb|CI395320.1|CI395320
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88524842|gb|CI453795.1|CI453795
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88294989|gb|CI522943.1|CI522943
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88663563|gb|CI483262.1|CI483262
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88533075|gb|CI460608.1|CI460608
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|33812923|gb|CF332349.1|CF332349
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|29676310|gb|CB672585.1|CB672585
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88436844|gb|CI521595.1|CI521595
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATNTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88555146|gb|CI485384.1|CI485384
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88527958|gb|CI456157.1|CI456157
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|4715388|gb|AU056505.1|AU056505
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|29667066|gb|CB663341.1|CB663341
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|86602926|gb|CI357290.1|CI357290
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88546591|gb|CI476243.1|CI476243
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|15857481|gb|BI810293.1|BI810293
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: ATGTGTACTTTGATTTCCATGGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88554682|gb|CI484875.1|CI484875
genomic: ATGTGTACTTTGATTTCCAT-GTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88545133|gb|CI474673.1|CI474673
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88537023|gb|CI464832.1|CI464832
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88553572|gb|CI483693.1|CI483693
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|86840245|gb|CI342475.1|CI342475
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88550632|gb|CI480626.1|CI480626
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGAEST: gi|88413912|gb|CI530884.1|CI530884
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACGGCACGTGGAGCCACAAGTTACAACTGATGAGTATGAGCGGGGATCTTATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaataacatcattgcatgcatattagaatctattttctggcatggtattgctgtttccaatcgagttctctattagctgggctcagtatggcagtagtaatactaatttctaagatggtacccttcttcgactgtgtttaacttgcttataccgttgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG