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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGGCGGCTGCAGAGCATGGAGATTTGGCTCTTATTACAGTTGAAGGCCCCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagttttctacattcttgatttcttttgtaccgtttctacttatatactgttttcttttgtgttcttctaatgttatttgaagtcagtttcagtaat...

Basic information

species Oryza sativa
transcript LOC_Os01g46510.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM5G824843_T01 (Zea mays), 5'ss of exon 3
TCGGGCGGCTGCAGAGCATGGAGATTTGGCTCTTATTACAGTTGAAGGCCCCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagttttctacattcttgatttcttttgtaccgtttctacttatatactgttttcttttgtgttcttctaa-tgttatttgaagtcagttt-cagtaat
|||||| |||| |||||||||||||||||||||||| || |||||||  ||| ||  |||      ||| ||| || | || || || |||||||||||||||     |||    |  | |||   ||| || ||  || |  |||| |  | |  | |||| ||   |  ||| |||||| |||||| ||| |  | ||| 
TCGGGCAGCTGAAGAGCATGGAGATTTGGCTCTTATCACTGTTGAAGCTCCCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAGgtatgacattcagtgtgatggatgcttttagtgcccattttctttat-tgatatgctgttttctgacttcgtaagtgttatctgaagttagtgtataataa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88352827|gb|CI678852.1|CI678852
EST:     CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG                         GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: gi|58666107|gb|CK054793.1|CK054793
EST:     CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG                         GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: gi|88585007|gb|CI702607.1|CI702607
EST:     CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG                         GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: gi|58665271|gb|CK053957.1|CK053957
EST:     CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG                         GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: gi|58587152|gb|CF985460.1|CF985460
EST:     CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG                         GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: gi|88852155|gb|CI683673.1|CI683673
EST:     CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG                         GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: gi|58612142|gb|CK039854.1|CK039854
EST:     CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG                         GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: gi|58662716|gb|CK051402.1|CK051402
EST:     CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG                         GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: gi|58669479|gb|CK058165.1|CK058165
EST:     CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG                         GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA