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TGCTTTGATTGCTCATTTTCAGAATTCTAGCCTGATGAATGAAGACAAATGGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatatctctagtgcttattgtatacactaaatataccatatgagtgaccacttctgactgaccctattcgcacaaaatgattgacatggcggttttatacatattattattttctgataaagatacatattattattgcag
species | Oryza sativa |
transcript | LOC_Os05g01240.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAG GAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGGEST: gi|29625695|gb|CB630706.1|CB630706
genomic: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatat ... attattgcagGAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGG
EST: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAG GAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGGEST: gi|33381398|gb|CF196741.1|CF196741
genomic: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatat ... attattgcagGAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGG
EST: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAG GAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGGEST: gi|29674666|gb|CB670941.1|CB670941
genomic: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatat ... attattgcagGAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGG
EST: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAG GAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGGEST: gi|88902803|gb|CI088341.1|CI088341
genomic: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatat ... attattgcagGAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGG
EST: ACAAAGATGGTCCAAATGCAGGAGATCAG GAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGGEST: gi|86854490|gb|CI256612.1|CI256612
genomic: ACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatat ... attattgcagGAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGG
EST: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAG GAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGGEST: gi|88840608|gb|CI080062.1|CI080062
genomic: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatat ... attattgcagGAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGG
EST: TTCCACAAAGATGGTCCAAATGCAGGAGATCAG GAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGGEST: gi|88268876|gb|CI377780.1|CI377780
genomic: TTCCACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatat ... attattgcagGAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGG
EST: ACAAAGATGGTCCAAATGCAGGAGATCAG GAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGGEST: gi|29674667|gb|CB670942.1|CB670942
genomic: ACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatat ... attattgcagGAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGG
EST: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAG GAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGGEST: gi|29678624|gb|CB674899.1|CB674899
genomic: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatat ... attattgcagGAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGG
EST: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAG GAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGG
genomic: GGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatat ... attattgcagGAGCCTTTTCCTGTGGGGAACAATGTCCGGTCTAGGGCTGGGAGAAATAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTTTGATTGCTCATTTTCAGAATTCTAGCCTGATGAATGAAGACAAATGGTGTCGACCTATGCTTTTCCACAAAGATGGTCCAAATGCAGGAGATCAGgtgtgaatatctctagtgcttattgtatacactaaatataccatatgagtgaccacttctgactgaccctattcgcacaaaatgattgacatggcggttttatacatattattattttctgataaagatacatattattattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA