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TTCGTGATCATTGGACAAGTATTCCAGCCAACTCAATACAGCTCCAGGAGCTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCTATTTgtacggttcccattcttgcgttttccctctactgtctttatttacactttcttaaccatctgcgtttatgtacatcatccctcttccagaaaatgaatta...
species | Oryza sativa |
transcript | LOC_Os03g61950.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTATCAACGCCTCATTCTTCGCCGCTATTT GGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCAEST: gi|25806211|gb|CA762172.1|CA762172
genomic: TTATCAACGCCTCATTCTTCGCCGCTATTTgtacggttcc ... acggttacagGGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCA
EST: CTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCTATTT GGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCAEST: gi|27577131|gb|CA999825.1|CA999825
genomic: CTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCTATTTgtacggttcc ... acggttacagGGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCA
EST: CTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCTATTT GGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCAEST: gi|58676211|gb|CK064898.1|CK064898
genomic: CTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCTATTTgtacggttcc ... acggttacagGGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCA
EST: AGGGATTATCAACGCCTCATTCTTCGCCGCTATTT GGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCAEST: gi|27547744|gb|CA767413.2|CA767413
genomic: AGGGATTATCAACGCCTCATTCTTCGCCGCTATTTgtacggttcc ... acggttacagGGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCA
EST: CTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCTATTT GGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCA
genomic: CTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCTATTTgtacggttcc ... acggttacagGGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGTGATCATTGGACAAGTATTCCAGCCAACTCAATACAGCTCCAGGAGCTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCTATTTgtacggttcccattcttgcgttttccctctactgtctttatttacactttcttaaccatctgcgtttatgtacatcatccctcttccagaaaatgaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttc