1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TACGAAGACGATGAAGGTGACCGGGTGCTACTGACAACTGATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttgttcttggactcttggtactatagtttactctatgtagcaactcgtagagctctccaacttttcttgcttccatctatctcactactatgaatatctcattgtcag
species | Oryza sativa |
transcript | LOC_Os12g07190.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|29617499|gb|CB622511.1|CB622511
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|29616352|gb|CB621364.1|CB621364
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|29677624|gb|CB673899.1|CB673899
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|86497158|gb|CI139791.1|CI139791
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|88967350|gb|CI002512.1|CI002512
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|58667528|gb|CK056214.1|CK056214
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|29628515|gb|CB633526.1|CB633526
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|29620737|gb|CB625748.1|CB625748
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|29657212|gb|CB653487.1|CB653487
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|29683888|gb|CB680163.1|CB680163
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|88967353|gb|CI002513.1|CI002513
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCCAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|29658285|gb|CB654560.1|CB654560
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|86501420|gb|CI144053.1|CI144053
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|66916619|gb|CX103467.1|CX103467
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|29631388|gb|CB636397.1|CB636397
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|88224338|gb|CI224187.1|CI224187
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAGEST: gi|13904833|gb|BF889471.1|BF889471
genomic: ATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
EST: TGCCGATCTTGCTGGTGCCGGTGCTCCATGCCAAATCGTCCGGTTTGAAG GTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGAC-AAG
genomic: TGCCGATCTTGCTGGTGCC-GTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttg ... tcattgtcagGTTCTGAAGTTGCATATCGACCTGTCTGAATCCAGCACAGAGGTGACAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGAAGACGATGAAGGTGACCGGGTGCTACTGACAACTGATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGgtatctgttgttcttggactcttggtactatagtttactctatgtagcaactcgtagagctctccaacttttcttgcttccatctatctcactactatgaatatctcattgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG